Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next-generation DNA sequencing

Next-generation sequencing technologies for environmental DNA research

(2012) SHADI SHOKRALLA et al.   MOLECULAR ECOLOGY

Biogeographical patterns of soil molecular microbial biomass as influenced by soil characteristics and management

(2011) S. Dequiedt et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos

(2011) Mehrdad Hajibabaei et al.   PLoS One

Global Patterns of Bacterial Beta-Diversity in Seafloor and Seawater Ecosystems

(2011) Lucie Zinger et al.   PLoS One

Persistence of Environmental DNA in Freshwater Ecosystems

(2011) Tony Dejean et al.   PLoS One

Ecological assessment of estuarine sediments by pyrosequencing eukaryotic ribosomal DNA

(2010) Anthony A Chariton et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Beyond taxonomy: a review of macroinvertebrate trait-based community descriptors as tools for freshwater biomonitoring

(2010) Salomé Menezes et al.   JOURNAL OF APPLIED ECOLOGY

Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises

(2010) S. CREER et al.   MOLECULAR ECOLOGY

Global Biodiversity: Indicators of Recent Declines

(2010) S. H. M. Butchart et al.   SCIENCE

Long-term datasets in biodiversity research and monitoring: assessing change in ecological communities through time

(2010) Anne E. Magurran et al.   TRENDS IN ECOLOGY & EVOLUTION

Toward a knowledge infrastructure for traits-based ecological risk assessment

(2010) Donald J Baird et al.   Integrated Environmental Assessment and Management

Algal assemblages for large river monitoring: Comparison among biovolume, absolute and relative abundance metrics

(2009) Euan D. Reavie et al.   ECOLOGICAL INDICATORS

New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: thetrnL approach

(2009) ALICE VALENTINI et al.   Molecular Ecology Resources

Continuous base identification for single-molecule nanopore DNA sequencing

(2009) James Clarke et al.   Nature Nanotechnology

Simultaneous Assessment of Soil Microbial Community Structure and Function through Analysis of the Meta-Transcriptome

(2008) Tim Urich et al.   PLoS One