Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms

Sequencing our way towards understanding global eukaryotic biodiversity

(2012) Holly M. Bik et al.   TRENDS IN ECOLOGY & EVOLUTION

Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing

(2011) André Gilles et al.   BMC GENOMICS

Survey of the Efficacy of a Short Fragment of the rbcL Gene as a Supplemental DNA Barcode for Diatoms

(2011) Michael L. MacGillivary et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Incorporation of DNA barcoding into a large-scale biomonitoring program: opportunities and pitfalls

(2011) Erik M. Pilgrim et al.   JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY

Can DNA barcodes of stream macroinvertebrates improve descriptions of community structure and water quality?

(2011) Bernard W. Sweeney et al.   JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY

Two decades of describing the unseen majority of aquatic microbial diversity

(2011) LUCIE ZINGER et al.   MOLECULAR ECOLOGY

Barcoding diatoms: evaluation of the V4 subregion on the 18S rRNA gene, including new primers and protocols

(2011) Jonas Zimmermann et al.   ORGANISMS DIVERSITY & EVOLUTION

Inferring Ecological Processes from Taxonomic, Phylogenetic and Functional Trait β-Diversity

(2011) James C. Stegen et al.   PLoS One

Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos

(2011) Mehrdad Hajibabaei et al.   PLoS One

Barcoding Diatoms: Exploring Alternatives to COI-5P

(2011) Sarah E. Hamsher et al.   PROTIST

Macroecology of unicellular organisms - patterns and processes

(2011) Janne Soininen   Environmental Microbiology Reports

When species matches are unavailable are DNA barcodes correctly assigned to higher taxa? An assessment using sphingid moths

(2011) John Wilson et al.   BMC ECOLOGY

Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions

(2010) Anke Behnke et al.   ENVIRONMENTAL MICROBIOLOGY

The use of partialcox1,rbcL and LSU rDNA sequences for phylogenetics and species identification within theNitzschia paleaspecies complex (Bacillariophyceae)

(2010) Rosa Trobajo et al.   EUROPEAN JOURNAL OF PHYCOLOGY

Experimental factors affecting PCR-based estimates of microbial species richness and evenness

(2010) Anna Engelbrektson et al.   ISME Journal

Cost-efficiency of biodiversity indicators for Mediterranean ecosystems and the effects of socio-economic factors

(2010) Yael Mandelik et al.   JOURNAL OF APPLIED ECOLOGY

Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

(2010) ANTHONY S. AMEND et al.   MOLECULAR ECOLOGY

454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases

(2010) Leho Tedersoo et al.   NEW PHYTOLOGIST

Assessment of Bias Associated with Incomplete Extraction of Microbial DNA from Soil

(2009) L. M. Feinstein et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Influence of slight differences in environmental conditions (light, hydrodynamics) on the structure and function of periphyton

(2009) A. Villeneuve et al.   AQUATIC SCIENCES

Effect of PCR amplicon size on assessments of clone library microbial diversity and community structure

(2009) Julie A. Huber et al.   ENVIRONMENTAL MICROBIOLOGY

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

Reproducibility of read numbers in high-throughput sequencing analysis of nematode community composition and structure

(2009) DOROTA L. PORAZINSKA et al.   Molecular Ecology Resources

Barcoding diatoms: Is there a good marker?

(2009) MÓNICA B. J. MONIZ et al.   Molecular Ecology Resources

Initial community evenness favours functionality under selective stress

(2009) Lieven Wittebolle et al.   NATURE

Accurate determination of microbial diversity from 454 pyrosequencing data

(2009) Christopher Quince et al.   NATURE METHODS

A MOLECULAR SYSTEMATIC APPROACH TO EXPLORE DIVERSITY WITHIN THESELLAPHORA PUPULASPECIES COMPLEX (BACILLARIOPHYTA)

(2008) Katharine M. Evans et al.   JOURNAL OF PHYCOLOGY