The application of “-omics” technologies for the classification and identification of animals

Mitogenomic phylogeny of the common long-tailed macaque (Macaca fascicularis fascicularis)

(2015) Rasmus Liedigk et al.   BMC GENOMICS

Tracking invasion and invasiveness in Queensland fruit flies: From classical genetics to ‘omics’

(2015) William B. Sherwin et al.   Current Zoology

Potential and limitations of X-Ray micro-computed tomography in arthropod neuroanatomy: A methodological and comparative survey

(2015) Andy Sombke et al.   JOURNAL OF COMPARATIVE NEUROLOGY

DNA Barcoding Identifies Illegal Parrot Trade: Figure 1.

(2015) Priscila F. M. Gonçalves et al.   JOURNAL OF HEREDITY

Soup to Tree: The Phylogeny of Beetles Inferred by Mitochondrial Metagenomics of a Bornean Rainforest Sample

(2015) Alex Crampton-Platt et al.   MOLECULAR BIOLOGY AND EVOLUTION

Metagenome skimming for phylogenetic community ecology: a new era in biodiversity research

(2015) Anna Papadopoulou et al.   MOLECULAR ECOLOGY

Phylogenetic community ecology of soil biodiversity using mitochondrial metagenomics

(2015) Carmelo Andújar et al.   MOLECULAR ECOLOGY

Evolution of Darwin’s finches and their beaks revealed by genome sequencing

(2015) Sangeet Lamichhaney et al.   NATURE

DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity

(2015) Matthieu Leray et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Soil biodiversity and DNA barcodes: opportunities and challenges

(2015) Alberto Orgiazzi et al.   SOIL BIOLOGY & BIOCHEMISTRY

Tracking invasion and invasiveness in Queensland fruit flies: From classical genetics to ‘omics’

(2015) William B. Sherwin et al.   Current Zoology

Benchmark datasets for 3D MALDI- and DESI-imaging mass spectrometry

(2015) Janina Oetjen et al.   GigaScience

A New Dimension in Documenting New Species: High-Detail Imaging for Myriapod Taxonomy and First 3D Cybertype of a New Millipede Species (Diplopoda, Julida, Julidae)

(2015) Nesrine Akkari et al.   PLoS One

The broadcast spawning Caribbean shipworm, Teredothyra dominicensis (Bivalvia, Teredinidae), has invaded and become established in the eastern Mediterranean Sea

(2014) J. Reuben Shipway et al.   BIOLOGICAL INVASIONS

Transcriptome analyses and differential gene expression in a non-model fish species with alternative mating tactics

(2014) Celia Schunter et al.   BMC GENOMICS

Use of RAD sequencing for delimiting species

(2014) E Pante et al.   HEREDITY

Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea

(2014) J. Chun et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Comparative proteomics for the characterization of the most relevant Amblyomma tick species as vectors of zoonotic pathogens worldwide

(2014) Margarita Villar et al.   Journal of Proteomics

A comprehensive DNA barcode database for Central European beetles with a focus on Germany: adding more than 3500 identified species to BOLD

(2014) Lars Hendrich et al.   Molecular Ecology Resources

When everything converges: Integrative taxonomy with shell, DNA and venomic data reveals Conus conco, a new species of cone snails (Gastropoda: Conoidea)

(2014) Nicolas Puillandre et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Comparative population genomics in animals uncovers the determinants of genetic diversity

(2014) J. Romiguier et al.   NATURE

Speciation with gene flow in equids despite extensive chromosomal plasticity

(2014) Hákon Jónsson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenomics resolves the timing and pattern of insect evolution

(2014) B. Misof et al.   SCIENCE

The genomic landscape underlying phenotypic integrity in the face of gene flow in crows

(2014) J. W. Poelstra et al.   SCIENCE

Species Delimitation using Genome-Wide SNP Data

(2014) Adam D. Leaché et al.   SYSTEMATIC BIOLOGY

From barcoding single individuals to metabarcoding biological communities: towards an integrative approach to the study of global biodiversity

(2014) Melania E. Cristescu   TRENDS IN ECOLOGY & EVOLUTION

Ten years of next-generation sequencing technology

(2014) Erwin L. van Dijk et al.   TRENDS IN GENETICS

Integrative taxonomy of New Caledonian beetles: species delimitation and definition of the Uloma isoceroides species group (Coleoptera, Tenebrionidae, Ulomini), with the description of four new species

(2014) Fabien Condamine et al.   ZooKeys

Pallenopsis patagonica(Hoek, 1881) - a species complex revealed by morphology and DNA barcoding, with description of a new species ofPallenopsis Wilson, 1881

(2014) Andrea Weis et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

A new species of Cymodoce Leach, 1814 (Crustacea: Isopoda: Sphaeromatidae) based on morphological and molecular data, with a key to the Northern Indian Ocean species 

(2014) VALIALLAH KHALAJI-PIRBALOUTY et al.   ZOOTAXA

Turbo-taxonomy: 21 new species of Myzostomida (Annelida)

(2014) MINDI M. SUMMERS et al.   ZOOTAXA

Transcriptome Sequencing and Developmental Regulation of Gene Expression in Anopheles aquasalis

(2014) André L. Costa-da-Silva et al.   PLoS Neglected Tropical Diseases

A dataset comprising 141 magnetic resonance imaging scans of 98 extant sea urchin species

(2014) Alexander Ziegler et al.   GigaScience

A dataset comprising four micro-computed tomography scans of freshly fixed and museum earthworm specimens

(2014) Jennifer Lenihan et al.   GigaScience

Mitochondrial Diversity and Distribution of African Green Monkeys (ChlorocebusGray, 1870)

(2013) TANJA HAUS et al.   AMERICAN JOURNAL OF PRIMATOLOGY

Next-Generation Sequencing Platforms

(2013) Elaine R. Mardis   Annual Review of Analytical Chemistry

Identification of microorganisms by FTIR spectroscopy: perspectives and limitations of the method

(2013) Mareike Wenning et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Morphometric and molecular identification of individual barnacle cyprids from wild plankton: an approach to detecting fouling and invasive barnacle species

(2013) Hsi-Nien Chen et al.   BIOFOULING

Microbial genomic taxonomy

(2013) Cristiane C Thompson et al.   BMC GENOMICS

Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding

(2013) Yinqiu Ji et al.   ECOLOGY LETTERS

Zoological nomenclature in the digital era

(2013) Alessandro Minelli   Frontiers in Zoology

A correlative approach for combining microCT, light and transmission electron microscopy in a single 3D scenario

(2013) Stephan Handschuh et al.   Frontiers in Zoology

Biodiversity into your hands - A call for a virtual global natural history ‘metacollection’

(2013) Michael Balke et al.   Frontiers in Zoology

Integrative taxonomy on the fast track - towards more sustainability in biodiversity research

(2013) Alexander Riedel et al.   Frontiers in Zoology

Two new species of the rare lobster genus Thaumastocheles Wood-Mason, 1874 (Reptantia: Nephropidae) discovered from recent deep-sea expeditions in the Indo-West Pacific

(2013) Su-Ching Chang et al.   JOURNAL OF CRUSTACEAN BIOLOGY

A new species of tapir from the Amazon

(2013) Mario A. Cozzuol et al.   JOURNAL OF MAMMALOGY

Variation in the salivary proteomes of differentially virulent greenbug (Schizaphis graminum Rondani) biotypes

(2013) Scott J. Nicholson et al.   Journal of Proteomics

The First Venomous Crustacean Revealed by Transcriptomics and Functional Morphology: Remipede Venom Glands Express a Unique Toxin Cocktail Dominated by Enzymes and a Neurotoxin

(2013) Björn M. von Reumont et al.   MOLECULAR BIOLOGY AND EVOLUTION

Unlocking the vault: next-generation museum population genomics

(2013) Ke Bi et al.   MOLECULAR ECOLOGY

How to fail at species delimitation

(2013) Bryan C. Carstens et al.   MOLECULAR ECOLOGY

Comparison of molecular species identification for North Sea calanoid copepods (Crustacea) using proteome fingerprints and DNA sequences

(2013) S. Laakmann et al.   Molecular Ecology Resources

Modern clinical microbiology: new challenges and solutions

(2013) Pierre-Edouard Fournier et al.   NATURE REVIEWS MICROBIOLOGY

Development of hyperspectral imaging as a bio-optical taxonomic tool for pigmented marine organisms

(2013) Ragnhild Pettersen et al.   ORGANISMS DIVERSITY & EVOLUTION

Next-Generation Museomics Disentangles One of the Largest Primate Radiations

(2013) Katerina Guschanski et al.   SYSTEMATIC BIOLOGY

One hundred and one new species of Trigonopterus weevils from New Guinea

(2013) Alexander Riedel et al.   ZooKeys

The importance of biobanking in molecular taxonomy, with proposed definitions for vouchers in a molecular context

(2013) Jonas Astrin et al.   ZooKeys

Micro-computed tomography: Introducing new dimensions to taxonomy

(2013) Sarah Faulwetter et al.   ZooKeys

Resolution of the type material of the Asian elephant,Elephas maximusLinnaeus, 1758 (Proboscidea, Elephantidae)

(2013) Enrico Cappellini et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Ultra-deep sequencing enables high-fidelity recovery of biodiversity for bulk arthropod samples without PCR amplification

(2013) Xin Zhou et al.   GigaScience

Using chemo-taxonomy of host ants to help conserve the large blue butterfly

(2012) R.M. Guillem et al.   BIOLOGICAL CONSERVATION

From taxonomic literature to cybertaxonomic content

(2012) Jeremy Miller et al.   BMC BIOLOGY

Molecular and morphological characterization of mealybugs (Hemiptera: Pseudococcidae) from Chilean vineyards

(2012) M.C.G. Correa et al.   BULLETIN OF ENTOMOLOGICAL RESEARCH

Comparative description of ten transcriptomes of newly sequenced invertebrates and efficiency estimation of genomic sampling in non-model taxa

(2012) Ana Riesgo et al.   Frontiers in Zoology

Discrimination of freshwater fish species by Matrix-Assisted Laser Desorption/Ionization- Time Of Flight Mass Spectrometry (MALDI-TOF MS): a pilot study

(2012) Pietro Volta et al.   JOURNAL OF LIMNOLOGY

Potential of matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) for the identification of freshwater zooplankton: a pilot study with three Eudiaptomus (Copepoda: Diaptomidae) species

(2012) Nicoletta Riccardi et al.   JOURNAL OF PLANKTON RESEARCH

Evolution, radiation and chemotaxonomy of Lamellodysidea, a demosponge genus with anti-plasmodial metabolites

(2012) Dirk Erpenbeck et al.   MARINE BIOLOGY

Phylotranscriptomics to Bring the Understudied into the Fold: Monophyletic Ostracoda, Fossil Placement, and Pancrustacean Phylogeny

(2012) Todd H. Oakley et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome-wide patterns of divergence and gene flow across a butterfly radiation

(2012) Nicola J. Nadeau et al.   MOLECULAR ECOLOGY

Multi-locus species delimitation in closely related animals and fungi: one marker is not enough

(2012) JULIAN R. DUPUIS et al.   MOLECULAR ECOLOGY

Proteomics in evolutionary ecology: linking the genotype with the phenotype

(2012) ANGEL P. DIZ et al.   MOLECULAR ECOLOGY

An emergent science on the brink of irrelevance: a review of the past 8 years of DNA barcoding

(2012) H. R. TAYLOR et al.   Molecular Ecology Resources

Barcoding Queensland Fruit Flies (Bactrocera tryoni): impediments and improvements

(2012) MARK J. BLACKET et al.   Molecular Ecology Resources

Cuticular hydrocarbon profiles as a taxonomic tool: advantages, limitations and technical aspects

(2012) RICARDA KATHER et al.   PHYSIOLOGICAL ENTOMOLOGY

Environmental proteomics, biodiversity statistics and food-web structure

(2012) Nicholas J. Gotelli et al.   TRENDS IN ECOLOGY & EVOLUTION

Coalescent-based species delimitation in an integrative taxonomy

(2012) Matthew K. Fujita et al.   TRENDS IN ECOLOGY & EVOLUTION

Nomenclatural benchmarking: the roles of digital typification and telemicroscopy

(2012) Quentin Wheeler et al.   ZooKeys

The future of DNA sequence archiving

(2012) Guy Cochrane et al.   GigaScience

Use of laser scanning confocal microscopy for morphological taxonomy and the potential for digital type specimens (e-types)

(2011) AJ Brooker et al.   Aquatic Biology

Nuclear versus mitochondrial DNA: evidence for hybridization in colobine monkeys

(2011) Christian Roos et al.   BMC EVOLUTIONARY BIOLOGY

A guided tour of large genome size in animals: what we know and where we are heading

(2011) France Dufresne et al.   CHROMOSOME RESEARCH

Authentication of commercialized crab-meat in Chile using DNA Barcoding

(2011) Pilar A. Haye et al.   FOOD CONTROL

Using DNA-barcoding to make the necrobiont beetle family Cholevidae accessible for forensic entomology

(2011) Menno Schilthuizen et al.   FORENSIC SCIENCE INTERNATIONAL

Raman spectroscopy: lighting up the future of microbial identification

(2011) Lorna Ashton et al.   Future Microbiology

Need morphology always be required for new species descriptions?

(2011) L. G. Cook et al.   INVERTEBRATE SYSTEMATICS

Task Group Differences in Cuticular Lipids in the Honey Bee Apis mellifera

(2011) Ricarda Kather et al.   JOURNAL OF CHEMICAL ECOLOGY

The future of three-dimensional microscopic imaging in marine biology

(2011) Renaud Boistel et al.   Marine Ecology-An Evolutionary Perspective

Genetic variation in avocado stem weevilsCopturus aguacatae(Coleoptera: Curculionidae) in Mexico

(2011) Rachel C. Engstrand et al.   Mitochondrial DNA

Pancrustacean Phylogeny in the Light of New Phylogenomic Data: Support for Remipedia as the Possible Sister Group of Hexapoda

(2011) B. M. von Reumont et al.   MOLECULAR BIOLOGY AND EVOLUTION

Museum genomics: low-cost and high-accuracy genetic data from historical specimens

(2011) KEVIN C. ROWE et al.   Molecular Ecology Resources

Phylogenomic analyses unravel annelid evolution

(2011) Torsten H. Struck et al.   NATURE

Stable structural color patterns displayed on transparent insect wings

(2011) E. Shevtsova et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial species identification from MALDI-TOF mass spectra through data analysis and machine learning

(2011) Katrien De Bruyne et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Applications of whole-cell matrix-assisted laser-desorption/ionization time-of-flight mass spectrometry in systematic microbiology

(2011) Martin Welker et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Barcoding Fauna Bavarica: Myriapoda – a contribution to DNA sequence-based identifications of centipedes and millipedes (Chilopoda, Diplopoda)

(2011) Joerg Spelda et al.   ZooKeys

DNA Barcoding of Marine Metazoa

(2010) Ann Bucklin et al.   Annual Review of Marine Science

High-throughput DNA sequencing - concepts and limitations

(2010) Martin Kircher et al.   BIOESSAYS

Opportunities and challenges for digital morphology

(2010) Alexander Ziegler et al.   Biology Direct

Discrimination of different species from the genus Drosophila by intact protein profiling using matrix-assisted laser desorption ionization mass spectrometry

(2010) Ralph Feltens et al.   BMC EVOLUTIONARY BIOLOGY

BIODIVERSITY RESEARCH: Genetic diversity in two introduced biofouling amphipods (Ampithoe valida & Jassa marmorata) along the Pacific North American coast: investigation into molecular identification and cryptic diversity

(2010) Erik M. Pilgrim et al.   DIVERSITY AND DISTRIBUTIONS

The integrative future of taxonomy

(2010) Jose M. Padial et al.   Frontiers in Zoology

Evaluation of matrix-assisted laser desorption/ionization time of flight mass spectrometry for characterization of Culicoides nubeculosus biting midges

(2010) C. KAUFMANN et al.   MEDICAL AND VETERINARY ENTOMOLOGY

Metabolic fingerprinting as an indicator of biodiversity: towards understanding inter-specific relationships among Homoscleromorpha sponges

(2010) Julijana Ivanišević et al.   Metabolomics

Bayesian species delimitation using multilocus sequence data

(2010) Z. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evaluation of the use of multilocus sequence analysis (MLSA) to resolve taxonomic conflicts within the genus Marichromatium

(2010) Wilbert Serrano et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Non-destructive Determination of Age and Species of Anopheles gambiae s.l. Using Near-infrared Spectroscopy

(2009) Valeliana S. Mayagaya et al.   AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE

Integrative Taxonomy: A Multisource Approach to Exploring Biodiversity

(2009) Birgit C. Schlick-Steiner et al.   Annual Review of Entomology

Mitochondrial phylogeography of baboons (Papio spp.) – Indication for introgressive hybridization?

(2009) Dietmar Zinner et al.   BMC EVOLUTIONARY BIOLOGY

Barcoding bushmeat: molecular identification of Central African and South American harvested vertebrates

(2009) Mitchell J. Eaton et al.   CONSERVATION GENETICS

CLINES IN CUTICULAR HYDROCARBONS IN TWO DROSOPHILA SPECIES WITH INDEPENDENT POPULATION HISTORIES

(2009) Francesca D. Frentiu et al.   EVOLUTION

DNA Barcoding of Commercially Important Salmon and Trout Species (Oncorhynchus and Salmo) from North America

(2009) Rosalee S. Rasmussen et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Recovering full DNA barcodes from natural history collections of Tephritid fruitflies (Tephritidae, Diptera) using mini barcodes

(2009) J. K. J. VAN HOUDT et al.   Molecular Ecology Resources

Mass spectrometry tools for the classification and identification of bacteria

(2009) Sascha Sauer et al.   NATURE REVIEWS MICROBIOLOGY

Shifting the genomic gold standard for the prokaryotic species definition

(2009) Michael Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Species Uncertainties

(2009) R. M. May et al.   SCIENCE

Evolution of species-specific cuticular hydrocarbon patterns in Formica ants

(2008) STEPHEN J. MARTIN et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Salmon louse (Lepeophtheirus salmonis) transcriptomes during post molting maturation and egg production, revealed using EST-sequencing and microarray analysis

(2008) Christiane Eichner et al.   BMC GENOMICS

Fish Authentication by MALDI-TOF Mass Spectrometry

(2008) Maria Fiorella Mazzeo et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Mitochondrial phylogeny, taxonomy and biogeography of the silvered langur species group (Trachypithecus cristatus)

(2008) Christian Roos et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Broad phylogenomic sampling improves resolution of the animal tree of life

(2008) Casey W. Dunn et al.   NATURE

DNA barcoding for ecologists

(2008) Alice Valentini et al.   TRENDS IN ECOLOGY & EVOLUTION

Bioinformatics challenges of new sequencing technology

(2008) Mihai Pop et al.   TRENDS IN GENETICS

The use of secondary metabolite profiling in chemotaxonomy of filamentous fungi

(2007) Jens C. Frisvad et al.