How to fail at species delimitation

The carnivorous plant described asSarracenia alatacontains two cryptic species

(2013) Bryan C. Carstens et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Improved Reversible Jump Algorithms for Bayesian Species Delimitation

(2013) Bruce Rannala et al.   GENETICS

Multilocus phylogeny and Bayesian estimates of species boundaries reveal hidden evolutionary relationships and cryptic diversity in Southeast Asian monitor lizards

(2013) L. J. Welton et al.   MOLECULAR ECOLOGY

Molecular Species Delimitation in the Racomitrium canescens Complex (Grimmiaceae) and Implications for DNA Barcoding of Species Complexes in Mosses

(2013) Michael Stech et al.   PLoS One

Phylogenetic estimation error can decrease the accuracy of species delimitation: a Bayesian implementation of the general mixed Yule-coalescent model

(2012) Noah M Reid et al.   BMC EVOLUTIONARY BIOLOGY

SPECIES DELIMITATION WITH ABC AND OTHER COALESCENT-BASED METHODS: A TEST OF ACCURACY WITH SIMULATIONS AND AN EMPIRICAL EXAMPLE WITH LIZARDS OF THE LIOLAEMUS DARWINII COMPLEX (SQUAMATA: LIOLAEMIDAE)

(2012) Arley Camargo et al.   EVOLUTION

Detecting cryptic speciation in the widespread and morphologically conservative carpet chameleon (Furcifer lateralis) of Madagascar

(2012) A. M. FLORIO et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Defining evolutionary boundaries across parapatric ecomorphs of Black Salamanders (Aneides flavipunctatus) with conservation implications

(2012) Sean B. Reilly et al.   MOLECULAR ECOLOGY

Speciation in theRana chensinensisspecies complex and its relationship to the uplift of the Qinghai-Tibetan Plateau

(2012) WEI-WEI ZHOU et al.   MOLECULAR ECOLOGY

Multi-locus species delimitation in closely related animals and fungi: one marker is not enough

(2012) JULIAN R. DUPUIS et al.   MOLECULAR ECOLOGY

Large-scale species delimitation method for hyperdiverse groups

(2012) N. PUILLANDRE et al.   MOLECULAR ECOLOGY

The effects of sampling on delimiting species from multi-locus sequence data

(2012) Eric N. Rittmeyer et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Single-locus species delimitation: a test of the mixed Yule-coalescent model, with an empirical application to Philippine round-leaf bats

(2012) J. A. Esselstyn et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Unifying Model for the Analysis of Phenotypic, Genetic, and Geographic Data

(2012) Gilles Guillot et al.   SYSTEMATIC BIOLOGY

Coalescent-based species delimitation in an integrative taxonomy

(2012) Matthew K. Fujita et al.   TRENDS IN ECOLOGY & EVOLUTION

Adaptive Radiation and Ecological Opportunity in Sulawesi and Philippine Fanged Frog (Limnonectes) Communities

(2011) Mohammad I. Setiadi et al.   AMERICAN NATURALIST

DELIMITING SPECIES USING MULTILOCUS DATA: DIAGNOSING CRYPTIC DIVERSITY IN THE SOUTHERN CAVEFISH, TYPHLICHTHYS SUBTERRANEUS (TELEOSTEI: AMBLYOPSIDAE)

(2011) Matthew L. Niemiller et al.   EVOLUTION

Structurama: Bayesian Inference of Population Structure

(2011) John P. Huelsenbeck et al.   Evolutionary Bioinformatics

Joint Inference of Population Assignment and Demographic History

(2011) Sang Chul Choi et al.   GENETICS

Phylogenetic structure illuminates the mechanistic role of environmental heterogeneity in community organization

(2011) Richard D. Stevens et al.   JOURNAL OF ANIMAL ECOLOGY

An integrative approach to delimiting species in a rare but widespread mycoheterotrophic orchid

(2011) CRAIG F. BARRETT et al.   MOLECULAR ECOLOGY

Species delimitation in taxonomically difficult lichen-forming fungi: An example from morphologically and chemically diverse Xanthoparmelia (Parmeliaceae) in North America

(2011) Steven D. Leavitt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Speciation at the Mogollon Rim in the Arizona Mountain Kingsnake (Lampropeltis pyromelana)

(2011) Frank T. Burbrink et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Testing species delimitation in sympatric species complexes: The case of an African tropical tree, Carapa spp. (Meliaceae)

(2011) Jérôme Duminil et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Applications of next-generation sequencing to phylogeography and phylogenetics

(2011) John E. McCormack et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Species Delimitation in Taxonomically Difficult Fungi: The Case of Hymenogaster

(2011) Benjamin Stielow et al.   PLoS One

Species Delimitation and Phylogeography of Aphonopelma hentzi (Araneae, Mygalomorphae, Theraphosidae): Cryptic Diversity in North American Tarantulas

(2011) Chris A. Hamilton et al.   PLoS One

Haplowebs as a graphical tool for delimiting species: a revival of Doyle's "field for recombination" approach and its application to the coral genus Pocillopora in Clipperton

(2010) Jean-François Flot et al.   BMC EVOLUTIONARY BIOLOGY

Genes predict village of origin in rural Europe

(2010) Colm O'Dushlaine et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

The integrative future of taxonomy

(2010) Jose M. Padial et al.   Frontiers in Zoology

The computer program STRUCTURE does not reliably identify the main genetic clusters within species: simulations and implications for human population structure

(2010) S T Kalinowski   HEREDITY

SpedeSTEM: a rapid and accurate method for species delimitation

(2010) DANIEL D. ENCE et al.   Molecular Ecology Resources

Diversification in species complexes: Tests of species origin and delimitation in the Bursera simaruba clade of tropical trees (Burseraceae)

(2010) Julieta A. Rosell et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Delimiting Species without Nuclear Monophyly in Madagascar's Mouse Lemurs

(2010) David W. Weisrock et al.   PLoS One

Bayesian species delimitation using multilocus sequence data

(2010) Z. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bayesian species delimitation in West African forest geckos (Hemidactylus fasciatus)

(2010) A. D. Leache et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Species Delimitation Using Dominant and Codominant Multilocus Markers

(2010) Bernhard Hausdorf et al.   SYSTEMATIC BIOLOGY

Species Delimitation Using a Combined Coalescent and Information-Theoretic Approach: An Example from North American Myotis Bats

(2010) Bryan C. Carstens et al.   SYSTEMATIC BIOLOGY

Approximate Bayesian Computation (ABC) in practice

(2010) Katalin Csilléry et al.   TRENDS IN ECOLOGY & EVOLUTION

Integrative Taxonomy: A Multisource Approach to Exploring Biodiversity

(2009) Birgit C. Schlick-Steiner et al.   Annual Review of Entomology

STEM: species tree estimation using maximum likelihood for gene trees under coalescence

(2009) Laura S. Kubatko et al.   BIOINFORMATICS

An integrative approach to species delimitation in Benthomangelia (Mollusca: Conoidea)

(2009) NICOLAS PUILLANDRE et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

THE COMBINED EFFECTS OF RIVERS AND REFUGIA GENERATE EXTREME CRYPTIC FRAGMENTATION WITHIN THE COMMON GROUND SKINK (SCINCELLA LATERALIS)

(2009) Nathan D. Jackson et al.   EVOLUTION

Bayesian Inference of Species Trees from Multilocus Data

(2009) J. Heled et al.   MOLECULAR BIOLOGY AND EVOLUTION

DNA taxonomy in morphologically plastic taxa: Algorithmic species delimitation in the Boodlea complex (Chlorophyta: Cladophorales)

(2009) Frederik Leliaert et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

New Heuristic Methods for Joint Species Delimitation and Species Tree Inference

(2009) Brian C. O'Meara   SYSTEMATIC BIOLOGY

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

(2009) Ryan N. Gutenkunst et al.   PLoS Genetics

Bayesian inference of population size history from multiple loci

(2008) Joseph Heled et al.   BMC EVOLUTIONARY BIOLOGY

ESTIMATING SPECIES TREES USING MULTIPLE-ALLELE DNA SEQUENCE DATA

(2008) Liang Liu et al.   EVOLUTION

IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?

(2008) Scott V. Edwards   EVOLUTION

Does gene flow destroy phylogenetic signal? The performance of three methods for estimating species phylogenies in the presence of gene flow

(2008) A ECKERT et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The snake family Psammophiidae (Reptilia: Serpentes): Phylogenetics and species delimitation in the African sand snakes (Psammophis Boie, 1825) and allied genera

(2008) Christopher M.R. Kelly et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Allopolyploid speciation in Persicaria (Polygonaceae): Insights from a low-copy nuclear region

(2008) S.-T. Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA