Microbial genomic taxonomy

Seeing the Tree of Life behind the phylogenetic forest

(2013) Pere Puigbò et al.   BMC BIOLOGY

Horizontal gene transfer and the evolution of bacterial and archaeal population structure

(2013) Martin F. Polz et al.   TRENDS IN GENETICS

Public good dynamics drive evolution of iron acquisition strategies in natural bacterioplankton populations

(2012) O. X. Cordero et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Population Genomics of Early Events in the Ecological Differentiation of Bacteria

(2012) B. J. Shapiro et al.   SCIENCE

Merging Taxonomy with Ecological Population Prediction in a Case Study of Vibrionaceae

(2011) Sarah P. Preheim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Towards a genome based taxonomy of Mycoplasmas

(2011) Cristiane C. Thompson et al.   INFECTION GENETICS AND EVOLUTION

Genome Sequence of the Human Pathogen Vibrio cholerae Amazonia

(2011) C. C. Thompson et al.   JOURNAL OF BACTERIOLOGY

Genome Sequencing Reveals Unique Mutations in Characteristic Metabolic Pathways and the Transfer of Virulence Genes between V. mimicus and V. cholerae

(2011) Duochun Wang et al.   PLoS One

Comparative genomic analysis reveals evidence of two novel Vibrio species closely related to V. cholerae

(2010) Bradd J Haley et al.   BMC MICROBIOLOGY

Spatial Variation in an Avian Host Community: Implications for Disease Dynamics

(2010) Sarah L. States et al.   EcoHealth

Metapopulation structure of Vibrionaceae among coastal marine invertebrates

(2010) Sarah P. Preheim et al.   ENVIRONMENTAL MICROBIOLOGY

Usefulness of a real-time PCR platform for G+C content and DNA-DNA hybridization estimations in vibrios

(2010) A. P. B. Moreira et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Culture-Independent Characterization of Bacterial Communities Associated with the Cold-Water Coral Lophelia pertusa in the Northeastern Gulf of Mexico

(2009) C. A. Kellogg et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genomic taxonomy of vibrios

(2009) Cristiane C Thompson et al.   BMC EVOLUTIONARY BIOLOGY

Analysis of genomic signatures in prokaryotes using multinomial regression and hierarchical clustering

(2009) Jon Bohlin et al.   BMC GENOMICS

Metagenomic signatures of 86 microbial and viral metagenomes

(2009) Dana Willner et al.   ENVIRONMENTAL MICROBIOLOGY

Phylogenetic Signals in DNA Composition: Limitations and Prospects

(2009) J. Mrazek   MOLECULAR BIOLOGY AND EVOLUTION

Examination of Genome Homogeneity in Prokaryotes Using Genomic Signatures

(2009) Jon Bohlin et al.   PLoS One

Shifting the genomic gold standard for the prokaryotic species definition

(2009) Michael Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA