Biphasic cellular adaptations and ecological implications of Alteromonas macleodii degrading a mixture of algal polysaccharides

Genetic analyses unravel the crucial role of a horizontally acquired alginate lyase for brown algal biomass degradation by Z obellia galactanivorans

(2017) Yongtao Zhu et al.   ENVIRONMENTAL MICROBIOLOGY

Aquatic adaptation of a laterally acquired pectin degradation pathway in marine gammaproteobacteria

(2017) Jan-Hendrik Hehemann et al.   ENVIRONMENTAL MICROBIOLOGY

The Trichodesmium consortium: conserved heterotrophic co-occurrence and genomic signatures of potential interactions

(2017) Michael D Lee et al.   ISME Journal

An alternative polysaccharide uptake mechanism of marine bacteria

(2017) Greta Reintjes et al.   ISME Journal

Polysaccharide Utilization Loci: Fueling Microbial Communities

(2017) Julie M. Grondin et al.   JOURNAL OF BACTERIOLOGY

Prioritization of polysaccharide utilization and control of regulator activation inBacteroides thetaiotaomicron

(2017) Nathan D. Schwalm et al.   MOLECULAR MICROBIOLOGY

Coastal bacterioplankton community response to diatom-derived polysaccharide microgels

(2017) Joe D Taylor et al.   Environmental Microbiology Reports

Reciprocal Prioritization to Dietary Glycans by Gut Bacteria in a Competitive Environment Promotes Stable Coexistence

(2017) Yunus E. Tuncil et al.   mBio

Carrageenan catabolism is encoded by a complex regulon in marine heterotrophic bacteria

(2017) Elizabeth Ficko-Blean et al.   Nature Communications

The seasonal variation of fucoidan within three species of brown macroalgae

(2017) H.R. Fletcher et al.   Algal Research-Biomass Biofuels and Bioproducts

Combined Carbohydrates Support Rich Communities of Particle-Associated Marine Bacterioplankton

(2017) Martin Sperling et al.   Frontiers in Microbiology

Gene Expression Analysis of Zobellia galactanivorans during the Degradation of Algal Polysaccharides Reveals both Substrate-Specific and Shared Transcriptome-Wide Responses

(2017) François Thomas et al.   Frontiers in Microbiology

Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life

(2017) Donovan H. Parks et al.   Nature Microbiology

A Synthetic Community System for Probing Microbial Interactions Driven by Exometabolites

(2017) John L. Chodkowski et al.   mSystems

Habitat and taxon as driving forces of carbohydrate catabolism in marine heterotrophic bacteria: example of the model algae-associated bacterium Zobellia galactanivorans DsijT

(2016) Tristan Barbeyron et al.   ENVIRONMENTAL MICROBIOLOGY

Response of bacterial communities from California coastal waters to alginate particles and an alginolytic Alteromonas macleodii strain

(2016) Maximilian Mitulla et al.   ENVIRONMENTAL MICROBIOLOGY

Polysaccharide utilisation loci of Bacteroidetes from two contrasting open ocean sites in the North Atlantic

(2016) Christin M. Bennke et al.   ENVIRONMENTAL MICROBIOLOGY

Transcriptional response of Prochlorococcus to co-culture with a marine Alteromonas: differences between strains and the involvement of putative infochemicals

(2016) Dikla Aharonovich et al.   ISME Journal

IMG/M: integrated genome and metagenome comparative data analysis system

(2016) I-Min A. Chen et al.   NUCLEIC ACIDS RESEARCH

Methanol Production by a Broad Phylogenetic Array of Marine Phytoplankton

(2016) Tracy J. Mincer et al.   PLoS One

KdgF, the missing link in the microbial metabolism of uronate sugars from pectin and alginate

(2016) Joanne K. Hobbs et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Recurring patterns in bacterioplankton dynamics during coastal spring algae blooms

(2016) Hanno Teeling et al.   eLife

Genetic Manipulation of Competition for Nitrate between Heterotrophic Bacteria and Diatoms

(2016) Rachel E. Diner et al.   Frontiers in Microbiology

Agarolytic bacteriumPersicobactersp. CCB-QB2 exhibited a diauxic growth involving galactose utilization pathway

(2016) Go Furusawa et al.   MicrobiologyOpen

A catalogue of 136 microbial draft genomes from Red Sea metagenomes

(2016) Mohamed F. Haroon et al.   Scientific Data

BPGA- an ultra-fast pan-genome analysis pipeline

(2016) Narendrakumar M. Chaudhari et al.   Scientific Reports

Bacterial community dynamics during polysaccharide degradation at contrasting sites in the Southern and Atlantic Oceans

(2015) Matthias Wietz et al.   ENVIRONMENTAL MICROBIOLOGY

Different utilization of alginate and other algal polysaccharides by marineAlteromonas macleodiiecotypes

(2015) Anna M. Neumann et al.   ENVIRONMENTAL MICROBIOLOGY

A New Versatile Microarray-based Method for High Throughput Screening of Carbohydrate-active Enzymes

(2015) Silvia Vidal-Melgosa et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Nutritional stress effects under different nitrogen sources on the genes in microalgaIsochrysis zhangjiangensisand the assistance ofAlteromonas macleodiiin releasing the stress of amino acid deficiency

(2015) Shuang Wu et al.   JOURNAL OF PHYCOLOGY

Putative Alginate Assimilation Process of the Marine Bacterium Saccharophagus degradans 2-40 Based on Quantitative Proteomic Analysis

(2015) Toshiyuki Takagi et al.   MARINE BIOTECHNOLOGY

Survivability of Microbes in Natural Environments and Their Ecological Impacts

(2015) Shin Haruta et al.   MICROBES AND ENVIRONMENTS

Human gut Bacteroidetes can utilize yeast mannan through a selfish mechanism

(2015) Fiona Cuskin et al.   NATURE

2016 update of the PRIDE database and its related tools

(2015) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

HMMER web server: 2015 update

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Characterisation of algal organic matter produced by bloom-forming marine and freshwater algae

(2015) L.O. Villacorte et al.   WATER RESEARCH

Exometabolite niche partitioning among sympatric soil bacteria

(2015) Richard Baran et al.   Nature Communications

Structural and biochemical characterization of the laminarinaseZgLamCGH16fromZobellia galactanivoranssuggests preferred recognition of branched laminarin

(2015) Aurore Labourel et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Cloning, expression, and biochemical characterization of a novel GH16 β-agarase AgaG1 from Alteromonas sp. GNUM-1

(2014) Won-Jae Chi et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

A sweet new wave: structures and mechanisms of enzymes that digest polysaccharides from marine algae

(2014) Jan-Hendrik Hehemann et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Dissolved organic matter (DOM) release by phytoplankton in the contemporary and future ocean

(2014) Daniel C.O. Thornton   EUROPEAN JOURNAL OF PHYCOLOGY

Biogeochemistry of dissolved organic matter in an anoxic intertidal creek bank

(2014) Michael Seidel et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Niches of two polysaccharide-degrading Polaribacter isolates from the North Sea during a spring diatom bloom

(2014) Peng Xing et al.   ISME Journal

Functional characterization of polysaccharide utilization loci in the marine Bacteroidetes ‘Gramella forsetii’ KT0803

(2014) Antje Kabisch et al.   ISME Journal

Deciphering key features in protein structures with the new ENDscript server

(2014) Xavier Robert et al.   NUCLEIC ACIDS RESEARCH

Genomic Diversity of “Deep Ecotype” Alteromonas macleodii Isolates: Evidence for Pan-Mediterranean Clonal Frames

(2013) Mario López-Pérez et al.   Genome Biology and Evolution

Ecology of marine Bacteroidetes: a comparative genomics approach

(2013) Beatriz Fernández-Gómez et al.   ISME Journal

Microdiversity of extracellular enzyme genes among sequenced prokaryotic genomes

(2013) Amy E Zimmerman et al.   ISME Journal

Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages

(2013) Craig E Nelson et al.   ISME Journal

The β-GlucanaseZgLamA fromZobellia galactanivoransEvolved a Bent Active Site Adapted for Efficient Degradation of Algal Laminarin

(2013) Aurore Labourel et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Detecting Sequence Homology at the Gene Cluster Level with MultiGeneBlast

(2013) Marnix H. Medema et al.   MOLECULAR BIOLOGY AND EVOLUTION

Dynamic responses ofBacteroides thetaiotaomicronduring growth on glycan mixtures

(2013) Theresa E. Rogers et al.   MOLECULAR MICROBIOLOGY

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

Characterization of the first alginolytic operons in a marine bacterium: from their emergence in marine Flavobacteriia to their independent transfers to marine Proteobacteria and human gut Bacteroides

(2012) François Thomas et al.   ENVIRONMENTAL MICROBIOLOGY

Chitin colonization, chitin degradation and chitin-induced natural competence of Vibrio cholerae are subject to catabolite repression

(2012) Melanie Blokesch   ENVIRONMENTAL MICROBIOLOGY

Prioritization of a plant polysaccharide over a mucus carbohydrate is enforced by a Bacteroides hybrid two-component system

(2012) Jonathan B. Lynch et al.   MOLECULAR MICROBIOLOGY

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

Capturing Single Cell Genomes of Active Polysaccharide Degraders: An Unexpected Contribution of Verrucomicrobia

(2012) Manuel Martinez-Garcia et al.   PLoS One

Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom

(2012) H. Teeling et al.   SCIENCE

Physiological diversity of Roseobacter clade bacteria co-occurring during a phytoplankton bloom in the North Sea

(2012) Sarah Hahnke et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Genomes of surface isolates of Alteromonas macleodii: the life of a widespread marine opportunistic copiotroph

(2012) Mario López-Pérez et al.   Scientific Reports

A simple and efficient method for the solid-phase extraction of dissolved organic matter (SPE-DOM) from seawater

(2011) Thorsten Dittmar et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Dependence of the Cyanobacterium Prochlorococcus on Hydrogen Peroxide Scavenging Microbes for Growth at the Ocean's Surface

(2011) J. Jeffrey Morris et al.   PLoS One

Latitudinal Gradients in Degradation of Marine Dissolved Organic Carbon

(2011) Carol Arnosti et al.   PLoS One

System-level strategies for studying the metabolism of Mycobacterium tuberculosis

(2010) Dany J. V. Beste et al.   Molecular BioSystems

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Growth phase-dependent global protein and metabolite profiles ofPhaeobacter gallaeciensisstrain DSM 17395, a member of the marineRoseobacter-clade

(2009) Hajo Zech et al.   PROTEOMICS

Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter

(2008) Elena Ivars-Martinez et al.   ISME Journal

Biogeography of the ubiquitous marine bacteriumAlteromonas macleodiidetermined by multilocus sequence analysis

(2008) ELENA IVARS-MARTÍNEZ et al.   MOLECULAR ECOLOGY

Carbon catabolite repression in bacteria: many ways to make the most out of nutrients

(2008) Boris Görke et al.   NATURE REVIEWS MICROBIOLOGY

Complete Genome Sequence of the Complex Carbohydrate-Degrading Marine Bacterium, Saccharophagus degradans Strain 2-40T

(2008) Ronald M. Weiner et al.   PLoS Genetics