Polysaccharide utilisation loci of Bacteroidetes from two contrasting open ocean sites in the North Atlantic

Recurring patterns in bacterioplankton dynamics during coastal spring algae blooms

(2016) Hanno Teeling et al.   eLife

Microorganisms living on macroalgae: diversity, interactions, and biotechnological applications

(2014) Marjolaine Martin et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Niches of two polysaccharide-degrading Polaribacter isolates from the North Sea during a spring diatom bloom

(2014) Peng Xing et al.   ISME Journal

Functional characterization of polysaccharide utilization loci in the marine Bacteroidetes ‘Gramella forsetii’ KT0803

(2014) Antje Kabisch et al.   ISME Journal

The Devil Lies in the Details: How Variations in Polysaccharide Fine-Structure Impact the Physiology and Evolution of Gut Microbes

(2014) Eric C. Martens et al.   JOURNAL OF MOLECULAR BIOLOGY

A discrete genetic locus confers xyloglucan metabolism in select human gut Bacteroidetes

(2014) Johan Larsbrink et al.   NATURE

Activities at the Universal Protein Resource (UniProt)

(2014)   NUCLEIC ACIDS RESEARCH

Evidence of Extensive DNA Transfer between Bacteroidales Species within the Human Gut

(2014) M. J. Coyne et al.   mBio

The Genome of the Alga-Associated Marine Flavobacterium Formosa agariphila KMM 3901TReveals a Broad Potential for Degradation of Algal Polysaccharides

(2013) Alexander J. Mann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ecology of marine Bacteroidetes: a comparative genomics approach

(2013) Beatriz Fernández-Gómez et al.   ISME Journal

Structure-Function Analysis of a Broad SpecificityPopulus trichocarpaEndo-β-glucanase Reveals an Evolutionary Link between Bacterial Licheninases and PlantXTHGene Products

(2013) Jens M. Eklöf et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The β-GlucanaseZgLamA fromZobellia galactanivoransEvolved a Bent Active Site Adapted for Efficient Degradation of Algal Laminarin

(2013) Aurore Labourel et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The abundance and variety of carbohydrate-active enzymes in the human gut microbiota

(2013) Abdessamad El Kaoutari et al.   NATURE REVIEWS MICROBIOLOGY

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

Comparative Genomic Analysis Indicates that Niche Adaptation of Terrestrial Flavobacteria Is Strongly Linked to Plant Glycan Metabolism

(2013) Max Kolton et al.   PLoS One

Mapping glycoconjugate-mediated interactions of marine Bacteroidetes with diatoms

(2013) Christin M. Bennke et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Tracing the origin of Arctic driftwood

(2013) Lena Hellmann et al.   Journal of Geophysical Research-Biogeosciences

Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5)

(2012) Henrik Aspeborg et al.   BMC EVOLUTIONARY BIOLOGY

Characterization of the first alginolytic operons in a marine bacterium: from their emergence in marine Flavobacteriia to their independent transfers to marine Proteobacteria and human gut Bacteroides

(2012) François Thomas et al.   ENVIRONMENTAL MICROBIOLOGY

Lateral gene transfer between theBacteroidetesandAcidobacteria: The case of α-l-rhamnosidases

(2012) Daniil G. Naumoff et al.   FEBS LETTERS

Biochemical and Structural Characterization of the Complex Agarolytic Enzyme System from the Marine BacteriumZobellia galactanivorans

(2012) Jan-Hendrik Hehemann et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

Bacteria of the human gut microbiome catabolize red seaweed glycans with carbohydrate-active enzyme updates from extrinsic microbes

(2012) J.-H. Hehemann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom

(2012) H. Teeling et al.   SCIENCE

Contrasting extracellular enzyme activities of particle-associated bacteria from distinct provinces of the North Atlantic Ocean

(2012) Carol Arnosti et al.   Frontiers in Microbiology

Evolution and Diversity of Plant Cell Walls: From Algae to Flowering Plants

(2011) Zoë A. Popper et al.   Annual Review of Plant Biology

New microbial mannan catabolic pathway that involves a novel mannosylglucose phosphorylase

(2011) Takeshi Senoura et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Genomic content of uncultured Bacteroidetes from contrasting oceanic provinces in the North Atlantic Ocean

(2011) Paola R. Gómez-Pereira et al.   ENVIRONMENTAL MICROBIOLOGY

MEROPS: the database of proteolytic enzymes, their substrates and inhibitors

(2011) N. D. Rawlings et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

Recognition and Degradation of Plant Cell Wall Polysaccharides by Two Human Gut Symbionts

(2011) Eric C. Martens et al.   PLOS BIOLOGY

Environmental and Gut Bacteroidetes: The Food Connection

(2011) François Thomas et al.   Frontiers in Microbiology

PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes

(2010) Nancy Y. Yu et al.   BIOINFORMATICS

Distinct flavobacterial communities in contrasting water masses of the North Atlantic Ocean

(2010) Paola R Gómez-Pereira et al.   ISME Journal

Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota

(2010) Jan-Hendrik Hehemann et al.   NATURE

Central and storage carbon metabolism of the brown alga Ectocarpus siliculosus: insights into the origin and evolution of storage carbohydrates in Eukaryotes

(2010) Gurvan Michel et al.   NEW PHYTOLOGIST

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Latitudinal distribution of prokaryotic picoplankton populations in the Atlantic Ocean

(2009) Martha Schattenhofer et al.   ENVIRONMENTAL MICROBIOLOGY

Complete Genome Sequence of Robiginitalea biformata HTCC2501

(2009) H.-M. Oh et al.   JOURNAL OF BACTERIOLOGY

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Phylogenetic classification of short environmental DNA fragments

(2008) Lutz Krause et al.   NUCLEIC ACIDS RESEARCH

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH

Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria)

(2008) J. M. Gonzalez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Starch Catabolism by a Prominent Human Gut Symbiont Is Directed by the Recognition of Amylose Helices

(2008) Nicole M. Koropatkin et al.   STRUCTURE