The Trichodesmium consortium: conserved heterotrophic co-occurrence and genomic signatures of potential interactions

Microbial diversity within the T richodesmium holobiont

(2016) Mónica Rouco et al.   ENVIRONMENTAL MICROBIOLOGY

Evidence for quorum sensing and differential metabolite production by a marine bacterium in response to DMSP

(2016) Winifred M Johnson et al.   ISME Journal

Methanol Production by a Broad Phylogenetic Array of Marine Phytoplankton

(2016) Tracy J. Mincer et al.   PLoS One

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters

(2015) Tilmann Weber et al.   NUCLEIC ACIDS RESEARCH

Trichodesmiumgenome maintains abundant, widespread noncoding DNA in situ, despite oligotrophic lifestyle

(2015) Nathan Walworth et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phytoplankton–bacterial interactions mediate micronutrient colimitation at the coastal Antarctic sea ice edge

(2015) Erin M. Bertrand et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Black Queen evolution: the role of leakiness in structuring microbial communities

(2015) J. Jeffrey Morris   TRENDS IN GENETICS

Irreversibly increased nitrogen fixation in Trichodesmium experimentally adapted to elevated carbon dioxide

(2015) David A. Hutchins et al.   Nature Communications

Anvi’o: an advanced analysis and visualization platform for ‘omics data

(2015) A. Murat Eren et al.   PeerJ

PQQ-dependent methanol dehydrogenases: rare-earth elements make a difference

(2014) Jan T. Keltjens et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Inference of interactions in cyanobacterial–heterotrophic co-cultures via transcriptome sequencing

(2014) Alexander S Beliaev et al.   ISME Journal

Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities

(2014) Chris L Dupont et al.   ISME Journal

Minimum entropy decomposition: Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences

(2014) A Murat Eren et al.   ISME Journal

Uptake mechanisms for inorganic iron and ferric citrate in Trichodesmium erythraeum IMS101

(2014) Kelly L. Roe et al.   Metallomics

Binning metagenomic contigs by coverage and composition

(2014) Johannes Alneberg et al.   NATURE METHODS

Cryptic carbon and sulfur cycling between surface ocean plankton

(2014) Bryndan P. Durham et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Sewage reflects the distribution of human faecalLachnospiraceae

(2013) Sandra L. McLellan et al.   ENVIRONMENTAL MICROBIOLOGY

Host-specific adaptation governs the interaction of the marine diatom, Pseudo-nitzschia and their microbiota

(2013) Marilou P Sison-Mangus et al.   ISME Journal

Increased intracellular concentrations of DMSP and DMSO in iron-limited oceanic phytoplanktonThalassiosira oceanicaandTrichodesmium erythraeum

(2013) Eva Bucciarelli et al.   LIMNOLOGY AND OCEANOGRAPHY

Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data

(2013) A. Murat Eren et al.   Methods in Ecology and Evolution

Characterization of bacterial epibionts on the cyanobacterium Trichodesmium

(2012) LR Hmelo et al.   AQUATIC MICROBIAL ECOLOGY

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Molecular evidence of iron limitation and availability in the global diazotroph Trichodesmium

(2012) Phoebe Dreux Chappell et al.   ISME Journal

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Interactions between Diatoms and Bacteria

(2012) S. A. Amin et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

PeroxiBase: a database for large-scale evolutionary analysis of peroxidases

(2012) Nizar Fawal et al.   NUCLEIC ACIDS RESEARCH

Disassembling Iron Availability to Phytoplankton

(2012) Yeala Shaked et al.   Frontiers in Microbiology

The Role of B Vitamins in Marine Biogeochemistry

(2011) Sergio A. Sañudo-Wilhelmy et al.   Annual Review of Marine Science

Bacterial community composition differs with species and toxigenicity of the diatom Pseudo-nitzschia

(2011) ML Guannel et al.   AQUATIC MICROBIAL ECOLOGY

The MetJ regulon in gammaproteobacteria determined by comparative genomics methods

(2011) Anne M Augustus et al.   BMC GENOMICS

The role of reduction in iron uptake processes in a unicellular, planktonic cyanobacterium

(2011) Chana Kranzler et al.   ENVIRONMENTAL MICROBIOLOGY

Modularity of methylotrophy, revisited

(2011) Ludmila Chistoserdova   ENVIRONMENTAL MICROBIOLOGY

Quorum sensing control of phosphorus acquisition in Trichodesmium consortia

(2011) Benjamin A S Van Mooy et al.   ISME Journal

Cross-basin comparison of phosphorus stress and nitrogen fixation in Trichodesmium

(2011) Annette M. Hynes et al.   LIMNOLOGY AND OCEANOGRAPHY

Catabolism of dimethylsulphoniopropionate: microorganisms, enzymes and genes

(2011) Andrew R. J. Curson et al.   NATURE REVIEWS MICROBIOLOGY

Dependence of the Cyanobacterium Prochlorococcus on Hydrogen Peroxide Scavenging Microbes for Growth at the Ocean's Surface

(2011) J. Jeffrey Morris et al.   PLoS One

Epibacterial community patterns on marine macroalgae are host-specific but temporally variable

(2010) Tim Lachnit et al.   ENVIRONMENTAL MICROBIOLOGY

Vitamin B12 excretion by cultures of the marine cyanobacteria Crocosphaera and Synechococcus

(2010) Sophie Bonnet et al.   LIMNOLOGY AND OCEANOGRAPHY

Chemoattraction to Dimethylsulfoniopropionate Throughout the Marine Microbial Food Web

(2010) J. R. Seymour et al.   SCIENCE

Coral-Associated Bacteria and Their Role in the Biogeochemical Cycling of Sulfur

(2009) J.-B. Raina et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Specific epibacterial communities on macroalgae: phylogeny matters more than habitat

(2009) T Lachnit et al.   Aquatic Biology

IMG ER: a system for microbial genome annotation expert review and curation

(2009) Victor M. Markowitz et al.   BIOINFORMATICS

A molecular assessment of the iron stress response in the two phylogenetic clades ofTrichodesmium

(2009) P. Dreux Chappell et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial community gene expression within colonies of the diazotroph, Trichodesmium, from the Southwest Pacific Ocean

(2009) Ian Hewson et al.   ISME Journal

Occurrence, phylogeny, structure, and function of catalases and peroxidases in cyanobacteria

(2009) Margit Bernroitner et al.   JOURNAL OF EXPERIMENTAL BOTANY

Photolysis of iron-siderophore chelates promotes bacterial-algal mutualism

(2009) S. A. Amin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chemistry of Marine Ligands and Siderophores

(2008) Julia M. Vraspir et al.   Annual Review of Marine Science

Facilitation of Robust Growth of Prochlorococcus Colonies and Dilute Liquid Cultures by "Helper" Heterotrophic Bacteria

(2008) J. J. Morris et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

AHL-driven quorum-sensing circuits: their frequency and function among the Proteobacteria

(2008) Rebecca J Case et al.   ISME Journal