Genetic analyses unravel the crucial role of a horizontally acquired alginate lyase for brown algal biomass degradation by Z obellia galactanivorans

Periplasmic Cytophaga hutchinsonii Endoglucanases Are Required for Use of Crystalline Cellulose as the Sole Source of Carbon and Energy

(2016) Yongtao Zhu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Structural Characterization of Sodium Alginate and Calcium Alginate

(2016) Hadas Hecht et al.   BIOMACROMOLECULES

Habitat and taxon as driving forces of carbohydrate catabolism in marine heterotrophic bacteria: example of the model algae-associated bacterium Zobellia galactanivorans DsijT

(2016) Tristan Barbeyron et al.   ENVIRONMENTAL MICROBIOLOGY

Metagenomics unveils the attributes of the alginolytic guilds of sediments from four distant cold coastal environments

(2016) Marina N. Matos et al.   ENVIRONMENTAL MICROBIOLOGY

Response of bacterial communities from California coastal waters to alginate particles and an alginolytic Alteromonas macleodii strain

(2016) Maximilian Mitulla et al.   ENVIRONMENTAL MICROBIOLOGY

The cell-wall active mannuronan C5-epimerases in the model brown algaEctocarpus: From gene context to recombinant protein

(2016) Richard Fischl et al.   GLYCOBIOLOGY

Comparative Analysis of Cellulophaga algicola and Flavobacterium johnsoniae Gliding Motility

(2016) Yongtao Zhu et al.   JOURNAL OF BACTERIOLOGY

Adaptive radiation by waves of gene transfer leads to fine-scale resource partitioning in marine microbes

(2016) Jan-Hendrik Hehemann et al.   Nature Communications

Functional heterologous expression and characterization of mannuronan C5-epimerase from the brown alga Saccharina japonica

(2016) Akira Inoue et al.   Algal Research-Biomass Biofuels and Bioproducts

Novel Alginate Lyase (Aly5) from a Polysaccharide-Degrading Marine Bacterium, Flammeovirga sp. Strain MY04: Effects of Module Truncation on Biochemical Characteristics, Alginate Degradation Patterns, and Oligosaccharide-Yielding Properties

(2015) Wenjun Han et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Gene Deletion Strategy To Examine the Involvement of the Two Chondroitin Lyases in Flavobacterium columnare Virulence

(2015) Nan Li et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Lignocellulose degradation mechanisms across the Tree of Life

(2015) Simon M Cragg et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Bacterial community dynamics during polysaccharide degradation at contrasting sites in the Southern and Atlantic Oceans

(2015) Matthias Wietz et al.   ENVIRONMENTAL MICROBIOLOGY

Continental-scale variation in seaweed host-associated bacterial communities is a function of host condition, not geography

(2015) Ezequiel M. Marzinelli et al.   ENVIRONMENTAL MICROBIOLOGY

The Cultivable Surface Microbiota of the Brown Alga Ascophyllum nodosum is Enriched in Macroalgal-Polysaccharide-Degrading Bacteria

(2015) Marjolaine Martin et al.   Frontiers in Microbiology

Chemical and enzymatic fractionation of cell walls from Fucales: insights into the structure of the extracellular matrix of brown algae

(2014) Estelle Deniaud-Bouët et al.   ANNALS OF BOTANY

FLP-FRT-Based Method To Obtain Unmarked Deletions ofCHU_3237(porU) and Large Genomic Fragments of Cytophaga hutchinsonii

(2014) Ying Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microorganisms living on macroalgae: diversity, interactions, and biotechnological applications

(2014) Marjolaine Martin et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Automatic prediction of polysaccharide utilization loci in Bacteroidetes species

(2014) Nicolas Terrapon et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

A sweet new wave: structures and mechanisms of enzymes that digest polysaccharides from marine algae

(2014) Jan-Hendrik Hehemann et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Deletion of the Cytophaga hutchinsonii type IX secretion system gene sprP results in defects in gliding motility and cellulose utilization

(2013) Yongtao Zhu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Comparative Characterization of Two Marine Alginate Lyases fromZobellia galactanivoransReveals Distinct Modes of Action and Exquisite Adaptation to Their Natural Substrate

(2013) François Thomas et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Construction of a shuttle vector for use in Riemerella anatipestifer

(2013) Qinghai Hu et al.   JOURNAL OF MICROBIOLOGICAL METHODS

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

PANDAseq: paired-end assembler for illumina sequences

(2012) Andre P Masella et al.   BMC BIOINFORMATICS

Characterization of the first alginolytic operons in a marine bacterium: from their emergence in marine Flavobacteriia to their independent transfers to marine Proteobacteria and human gut Bacteroides

(2012) François Thomas et al.   ENVIRONMENTAL MICROBIOLOGY

The role of planktonicFlavobacteriain processing algal organic matter in coastal East Antarctica revealed using metagenomics and metaproteomics

(2012) Timothy J. Williams et al.   ENVIRONMENTAL MICROBIOLOGY

What we can learn from sushi: a review on seaweed-bacterial associations

(2012) Joke Hollants et al.   FEMS MICROBIOLOGY ECOLOGY

Database resources of the National Center for Biotechnology Information

(2012)   NUCLEIC ACIDS RESEARCH

MicroScope—an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data

(2012) David Vallenet et al.   NUCLEIC ACIDS RESEARCH

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

An Engineered Microbial Platform for Direct Biofuel Production from Brown Macroalgae

(2012) A. J. Wargacki et al.   SCIENCE

Evolution and Diversity of Plant Cell Walls: From Algae to Flowering Plants

(2011) Zoë A. Popper et al.   Annual Review of Plant Biology

Development of replicative oriC plasmids and their versatile use in genetic manipulation of Cytophaga hutchinsonii

(2011) Yuanxi Xu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Discovery and structural characterization of a novel glycosidase family of marine origin

(2011) Etienne Rebuffet et al.   ENVIRONMENTAL MICROBIOLOGY

Development and Use of a Gene Deletion Strategy for Flavobacterium johnsoniae To Identify the Redundant Gliding Motility Genes remF, remG, remH, and remI

(2011) R. G. Rhodes et al.   JOURNAL OF BACTERIOLOGY

Using Superfolder Green Fluorescent Protein for Periplasmic Protein Localization Studies

(2011) T. Dinh et al.   JOURNAL OF BACTERIOLOGY

Environmental and Gut Bacteroidetes: The Food Connection

(2011) François Thomas et al.   Frontiers in Microbiology

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Flavobacterium johnsoniae sprB Is Part of an Operon Spanning the Additional Gliding Motility Genes sprC, sprD, and sprF

(2010) R. G. Rhodes et al.   JOURNAL OF BACTERIOLOGY

Evaluation of reference genes for real-time quantitative PCR in the marine flavobacterium Zobellia galactanivorans

(2010) François Thomas et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota

(2010) Jan-Hendrik Hehemann et al.   NATURE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

LytM-Domain Factors Are Required for Daughter Cell Separation and Rapid Ampicillin-Induced Lysis in Escherichia coli

(2009) T. Uehara et al.   JOURNAL OF BACTERIOLOGY

Complex Glycan Catabolism by the Human Gut Microbiota: The Bacteroidetes Sus-like Paradigm

(2009) Eric C. Martens et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Genetic Tools for Studying Capnocytophaga canimorsus

(2008) M. Mally et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Development of methods for the genetic manipulation of Flavobacterium columnare

(2008) Andrew M Staroscik et al.   BMC MICROBIOLOGY

Starch Catabolism by a Prominent Human Gut Symbiont Is Directed by the Recognition of Amylose Helices

(2008) Nicole M. Koropatkin et al.   STRUCTURE