The use of databases, data mining and immunoinformatics in vaccinology: where are we?
出版年份 2017 全文链接
标题
The use of databases, data mining and immunoinformatics in vaccinology: where are we?
作者
关键词
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出版物
Expert Opinion on Drug Discovery
Volume 13, Issue 2, Pages 117-130
出版商
Informa UK Limited
发表日期
2017-12-11
DOI
10.1080/17460441.2018.1413088
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- SAT2 Foot-and-Mouth Disease Virus Structurally Modified for Increased Thermostability
- (2017) Katherine A. Scott et al. JOURNAL OF VIROLOGY
- Radiomics: the bridge between medical imaging and personalized medicine
- (2017) Philippe Lambin et al. Nature Reviews Clinical Oncology
- Immunogenicity and structures of a rationally designed prefusion MERS-CoV spike antigen
- (2017) Jesper Pallesen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Personalized vaccinology: A review
- (2017) G.A. Poland et al. VACCINE
- Evaluation of immune responses of stabilised SAT2 antigens of foot-and-mouth disease in cattle
- (2017) Katherine A. Scott et al. VACCINE
- Vaccine Elicitation of High Mannose-Dependent Neutralizing Antibodies against the V3-Glycan Broadly Neutralizing Epitope in Nonhuman Primates
- (2017) Kevin O. Saunders et al. Cell Reports
- A computational model to predict the immune system activation by citrus-derived vaccine adjuvants
- (2016) Francesco Pappalardo et al. BIOINFORMATICS
- Major histocompatibility complex linked databases and prediction tools for designing vaccines
- (2016) Satarudra Prakash Singh et al. HUMAN IMMUNOLOGY
- Computational Discovery and Experimental Confirmation of TLR9 Receptor Antagonist Leads
- (2016) Maria Zatsepin et al. Journal of Chemical Information and Modeling
- Determinants of HIV-1 broadly neutralizing antibody induction
- (2016) Peter Rusert et al. NATURE MEDICINE
- DiseaseMeth version 2.0: a major expansion and update of the human disease methylation database
- (2016) Yichun Xiong et al. NUCLEIC ACIDS RESEARCH
- Vaccines against respiratory syncytial virus: The time has finally come
- (2016) Barney S. Graham VACCINE
- T Cell Antigen Receptor Recognition of Antigen-Presenting Molecules
- (2015) Jamie Rossjohn et al. Annual Review of Immunology
- Structure-Guided Design of an Anti-dengue Antibody Directed to a Non-immunodominant Epitope
- (2015) Luke N. Robinson et al. CELL
- A systems biology approach for diagnostic and vaccine antigen discovery in tropical infectious diseases
- (2015) Li Liang et al. CURRENT OPINION IN INFECTIOUS DISEASES
- Adversomics: a new paradigm for vaccine safety and design
- (2015) Jennifer A Whitaker et al. Expert Review of Vaccines
- Structure Based Modeling of Small Molecules Binding to the TLR7 by Atomistic Level Simulations
- (2015) Francesco Gentile et al. MOLECULES
- Recognition determinants of broadly neutralizing human antibodies against dengue viruses
- (2015) Alexander Rouvinski et al. NATURE
- Molecular signatures for vaccine development
- (2015) J. Maertzdorf et al. VACCINE
- Molecular signatures of vaccine adjuvants
- (2015) Thorunn Olafsdottir et al. VACCINE
- A highly stable prefusion RSV F vaccine derived from structural analysis of the fusion mechanism
- (2015) Anders Krarup et al. Nature Communications
- Oncogenomic portals for the visualization and analysis of genome-wide cancer data
- (2015) Katarzyna Klonowska et al. Oncotarget
- Antibody specific epitope prediction—emergence of a new paradigm
- (2015) Inbal Sela-Culang et al. Current Opinion in Virology
- Computational tools for epitope vaccine design and evaluation
- (2015) Linling He et al. Current Opinion in Virology
- HLA Class-II Associated HIV Polymorphisms Predict Escape from CD4+ T Cell Responses
- (2015) Nathan Erdmann et al. PLoS Pathogens
- Innate and Adaptive Immune Regulation During Chronic Viral Infections
- (2015) Elina I. Zuniga et al. Annual Review of Virology
- Antibody-Based Strategies to Prevent and Treat Influenza
- (2015) Zachary Shriver et al. Frontiers in Immunology
- Ontology-supported research on vaccine efficacy, safety and integrative biological networks
- (2014) Yongqun He Expert Review of Vaccines
- Overview of computational vaccinology: vaccine development through information technology
- (2014) Nishita Vaishnav et al. JOURNAL OF APPLIED GENETICS
- Assessment of Influenza Virus Hemagglutinin Stalk-Based Immunity in Ferrets
- (2014) F. Krammer et al. JOURNAL OF VIROLOGY
- A new class of highly potent, broadly neutralizing antibodies isolated from viremic patients infected with dengue virus
- (2014) Wanwisa Dejnirattisai et al. NATURE IMMUNOLOGY
- The UCSC Cancer Genomics Browser: update 2015
- (2014) Mary Goldman et al. NUCLEIC ACIDS RESEARCH
- An In Silico Approach for Modelling T-Helper Polarizing iNKT Cell Agonists
- (2014) Anton De Spiegeleer et al. PLoS One
- Rational design of small molecules as vaccine adjuvants
- (2014) T. Y.- H. Wu et al. Science Translational Medicine
- Identification of the Structural Basis of Thermal Lability of a Virus Provides a Rationale for Improved Vaccines
- (2014) Verónica Rincón et al. STRUCTURE
- Immune camouflage: Relevance to vaccines and human immunology
- (2014) Anne S De Groot et al. Human Vaccines & Immunotherapeutics
- Vaccine Adjuvant Informatics: From Data Integration and Analysis to Rational Vaccine Adjuvant Design
- (2014) Yongqun He Frontiers in Immunology
- Pathways of Antigen Processing
- (2013) Janice S. Blum et al. Annual Review of Immunology
- Complex Correlates of Protection After Vaccination
- (2013) S. A. Plotkin CLINICAL INFECTIOUS DISEASES
- Bioinformatics Resources and Tools for Conformational B-Cell Epitope Prediction
- (2013) Pingping Sun et al. Computational and Mathematical Methods in Medicine
- Vaccine design: emerging concepts and renewed optimism
- (2013) Sebastian K Grimm et al. CURRENT OPINION IN BIOTECHNOLOGY
- Hydrogen/deuterium exchange mass spectrometry for probing higher order structure of protein therapeutics: methodology and applications
- (2013) Hui Wei et al. DRUG DISCOVERY TODAY
- Human Monoclonal Antibodies Derived From Memory B Cells Following Live Attenuated Dengue Virus Vaccination or Natural Infection Exhibit Similar Characteristics
- (2013) Scott A. Smith et al. JOURNAL OF INFECTIOUS DISEASES
- Hemagglutinin Stalk-Based Universal Vaccine Constructs Protect against Group 2 Influenza A Viruses
- (2013) I. Margine et al. JOURNAL OF VIROLOGY
- Chimeric Hemagglutinin Influenza Virus Vaccine Constructs Elicit Broadly Protective Stalk-Specific Antibodies
- (2013) F. Krammer et al. JOURNAL OF VIROLOGY
- TCPA: a resource for cancer functional proteomics data
- (2013) Jun Li et al. NATURE METHODS
- Toll-Like Receptor 7 Agonists: Chemical Feature Based Pharmacophore Identification and Molecular Docking Studies
- (2013) Hui Yu et al. PLoS One
- Computational and Experimental Validation of B and T-Cell Epitopes of the In Vivo Immune Response to a Novel Malarial Antigen
- (2013) Elke S. Bergmann-Leitner et al. PLoS One
- Structure-Based Design of a Fusion Glycoprotein Vaccine for Respiratory Syncytial Virus
- (2013) J. S. McLellan et al. SCIENCE
- The Potent and Broadly Neutralizing Human Dengue Virus-Specific Monoclonal Antibody 1C19 Reveals a Unique Cross-Reactive Epitope on the bc Loop of Domain II of the Envelope Protein
- (2013) S. A. Smith et al. mBio
- Vaccines, Reverse Vaccinology, and Bacterial Pathogenesis
- (2013) I. Delany et al. Cold Spring Harbor Perspectives in Medicine
- Influenza virus hemagglutinin stalk-based antibodies and vaccines
- (2013) Florian Krammer et al. Current Opinion in Virology
- Nomenclature for Immune Correlates of Protection After Vaccination
- (2012) S. A. Plotkin et al. CLINICAL INFECTIOUS DISEASES
- MovingHelicobacter pylorivaccine development forward with bioinformatics and immunomics
- (2012) Leonard Moise et al. Expert Review of Vaccines
- Vaxjo: A Web-Based Vaccine Adjuvant Database and Its Application for Analysis of Vaccine Adjuvants and Their Uses in Vaccine Development
- (2012) Samantha Sayers et al. JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY
- Structural vaccinology starts to deliver
- (2012) Philip R. Dormitzer et al. NATURE REVIEWS MICROBIOLOGY
- Reliable B Cell Epitope Predictions: Impacts of Method Development and Improved Benchmarking
- (2012) Jens Vindahl Kringelum et al. PLoS Computational Biology
- Design and Characterization of Epitope-Scaffold Immunogens That Present the Motavizumab Epitope from Respiratory Syncytial Virus
- (2011) Jason S. McLellan et al. JOURNAL OF MOLECULAR BIOLOGY
- Structure of Respiratory Syncytial Virus Fusion Glycoprotein in the Postfusion Conformation Reveals Preservation of Neutralizing Epitopes
- (2011) J. S. McLellan et al. JOURNAL OF VIROLOGY
- Designing the Next Generation of Vaccines for Global Public Health
- (2011) Fabio Bagnoli et al. OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY
- Broadly neutralizing human antibody that recognizes the receptor-binding pocket of influenza virus hemagglutinin
- (2011) J. R. R. Whittle et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Structural basis for immunization with postfusion respiratory syncytial virus fusion F glycoprotein (RSV F) to elicit high neutralizing antibody titers
- (2011) K. A. Swanson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Structure-based approach to rationally design a chimeric protein for an effective vaccine against Group B Streptococcus infections
- (2011) A. Nuccitelli et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Computation-Guided Backbone Grafting of a Discontinuous Motif onto a Protein Scaffold
- (2011) M. L. Azoitei et al. SCIENCE
- A Neutralizing Antibody Selected from Plasma Cells That Binds to Group 1 and Group 2 Influenza A Hemagglutinins
- (2011) D. Corti et al. SCIENCE
- Rational Design of a Meningococcal Antigen Inducing Broad Protective Immunity
- (2011) M. Scarselli et al. Science Translational Medicine
- Systems vaccinology: learning to compute the behavior of vaccine induced immunity
- (2011) Helder I. Nakaya et al. Wiley Interdisciplinary Reviews-Systems Biology and Medicine
- Specific T-cell activation in an unspecific T-cell repertoire
- (2011) Hugo A. Van Den Berg et al. SCIENCE PROGRESS
- Identification of a Dominant Epitope in the Hemagglutinin of an Asian Highly Pathogenic Avian Influenza H5N1 Clade 1 Virus by Selection of Escape Mutants
- (2010) Helena Lage Ferreira et al. AVIAN DISEASES
- High-throughput prediction of protein antigenicity using protein microarray data
- (2010) Christophe N. Magnan et al. BIOINFORMATICS
- Correlates of Protection Induced by Vaccination
- (2010) S. A. Plotkin Clinical and Vaccine Immunology
- Defining the humoral immune response to infectious agents using high-density protein microarrays
- (2010) Adam Vigil et al. Future Microbiology
- Systems Vaccinology
- (2010) Bali Pulendran et al. IMMUNITY
- Reverse Vaccinology: Developing Vaccines in the Era of Genomics
- (2010) Alessandro Sette et al. IMMUNITY
- Innovative bioinformatic approaches for developing peptide-based vaccines against hypervariable viruses
- (2010) Danylo Sirskyj et al. IMMUNOLOGY AND CELL BIOLOGY
- Benchmarking B-Cell Epitope Prediction for the Design of Peptide-Based Vaccines: Problems and Prospects
- (2010) Salvador Eugenio C. Caoili JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY
- Identification of protective and broadly conserved vaccine antigens from the genome of extraintestinal pathogenic Escherichia coli
- (2010) D. G. Moriel et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Influenza Virus Vaccine Based on the Conserved Hemagglutinin Stalk Domain
- (2010) J. Steel et al. mBio
- Peptide Microarray-Based Identification of Mycobacterium tuberculosis Epitope Binding to HLA-DRB1*0101, DRB1*1501, and DRB1*0401
- (2009) S. Gaseitsiwe et al. Clinical and Vaccine Immunology
- Innate immunity
- (2009) Stuart E. Turvey et al. JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY
- ORFeome approach to the clonal, HLA allele-specific CD4 T-cell response to a complex pathogen in humans
- (2009) Lichen Jing et al. JOURNAL OF IMMUNOLOGICAL METHODS
- Structural and functional bases for broad-spectrum neutralization of avian and human influenza A viruses
- (2009) Jianhua Sui et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Adversomics: The Emerging Field of Vaccine Adverse Event Immunogenetics
- (2009) Gregory A. Poland et al. PEDIATRIC INFECTIOUS DISEASE JOURNAL
- Toward the Discovery of Vaccine Adjuvants: Coupling In Silico Screening and In Vitro Analysis of Antagonist Binding to Human and Mouse CCR4 Receptors
- (2009) Matthew N. Davies et al. PLoS One
- Antibody Recognition of a Highly Conserved Influenza Virus Epitope
- (2009) D. C. Ekiert et al. SCIENCE
- Thermostable foot-and-mouth disease virus as a vaccine candidate for endemic countries: A perspective
- (2009) Nagendra R. Hegde et al. VACCINE
- The Pangenome Structure of Escherichia coli: Comparative Genomic Analysis of E. coli Commensal and Pathogenic Isolates
- (2008) D. A. Rasko et al. JOURNAL OF BACTERIOLOGY
- Preventing Bacterial Infections with Pilus-Based Vaccines: the Group B Streptococcus Paradigm
- (2008) Immaculada Margarit et al. JOURNAL OF INFECTIOUS DISEASES
- An Extremely Diverse CD4 Response to Vaccinia Virus in Humans Is Revealed by Proteome-Wide T-Cell Profiling
- (2008) L. Jing et al. JOURNAL OF VIROLOGY
- Engineering Viable Foot-and-Mouth Disease Viruses with Increased Thermostability as a Step in the Development of Improved Vaccines
- (2008) R. Mateo et al. JOURNAL OF VIROLOGY
- A machine-learning approach for predicting B-cell epitopes
- (2008) Nimrod D. Rubinstein et al. MOLECULAR IMMUNOLOGY
- In silico identified CCR4 antagonists target regulatory T cells and exert adjuvant activity in vaccination
- (2008) J. Bayry et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A Systematic Assessment of MHC Class II Peptide Binding Predictions and Evaluation of a Consensus Approach
- (2008) Peng Wang et al. PLoS Computational Biology
- Computational characterization of B-cell epitopes
- (2007) Nimrod D. Rubinstein et al. MOLECULAR IMMUNOLOGY
- Benchmarking B cell epitope prediction: Underperformance of existing methods
- (2004) Martin J. Blythe et al. PROTEIN SCIENCE
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