Pleistocene diversification in an ancient lineage: a role for glacial cycles in the evolutionary history of Dioon Lindl. (Zamiaceae)

Estimating diversification rates for higher taxa: BAMM can give problematic estimates of rates and rate shifts

(2017) Andreas L. S. Meyer et al.   EVOLUTION

StarBEAST2 Brings Faster Species Tree Inference and Accurate Estimates of Substitution Rates

(2017) Huw A. Ogilvie et al.   MOLECULAR BIOLOGY AND EVOLUTION

Is BAMM Flawed? Theoretical and Practical Concerns in the Analysis of Multi-Rate Diversification Models

(2017) Daniel L. Rabosky et al.   SYSTEMATIC BIOLOGY

Alternative glacial-interglacial refugia demographic hypotheses tested on Cephalocereus columna-trajani (Cactaceae) in the intertropical Mexican drylands

(2017) Amelia Cornejo-Romero et al.   PLoS One

Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies

(2016) Erfan Sayyari et al.   MOLECULAR BIOLOGY AND EVOLUTION

Consequences of Secondary Calibrations on Divergence Time Estimates

(2016) John J. Schenk   PLoS One

Critically evaluating the theory and performance of Bayesian analysis of macroevolutionary mixtures

(2016) Brian R. Moore et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

How Well Can We Detect Lineage-Specific Diversification-Rate Shifts? A Simulation Study of Sequential AIC Methods

(2016) Michael R. May et al.   SYSTEMATIC BIOLOGY

A Phylogenomic Approach Based on PCR Target Enrichment and High Throughput Sequencing: Resolving the Diversity within the South American Species of Bartsia L. (Orobanchaceae)

(2016) Simon Uribe-Convers et al.   PLoS One

Strobilus and Seed Production of Dioon Edule (Zamiaceae) in a Population with low Seedling Density in San Luis Potosí, Mexico

(2016) Raymundo Mora et al.   Tropical Conservation Science

Origin and diversification of living cycads: a cautionary tale on the impact of the branching process prior in Bayesian molecular dating

(2015) Fabien L Condamine et al.   BMC EVOLUTIONARY BIOLOGY

SUMAC: Constructing Phylogenetic Supermatrices and Assessing Partially Decisive Taxon Coverage

(2015) William A. Freyman   Evolutionary Bioinformatics

geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees

(2014) Matthew W. Pennell et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Interglacial microrefugia and diversification of a cactus species complex: phylogeography and palaeodistributional reconstructions forPilosocereus aurisetusand allies

(2014) Isabel A. S. Bonatelli et al.   MOLECULAR ECOLOGY

Automatic Detection of Key Innovations, Rate Shifts, and Diversity-Dependence on Phylogenetic Trees

(2014) Daniel L. Rabosky   PLoS One

Characterization of the Uncertainty of Divergence Time Estimation under Relaxed Molecular Clock Models Using Multiple Loci

(2014) Tianqi Zhu et al.   SYSTEMATIC BIOLOGY

Phylogeography ofLiquidambar styraciflua(Altingiaceae) in Mesoamerica: survivors of a Neogene widespread temperate forest (or cloud forest) in North America?

(2014) Eduardo Ruiz-Sanchez et al.   Ecology and Evolution

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

Phylogeny of the cycads based on multiple single-copy nuclear genes: congruence of concatenated parsimony, likelihood and species tree inference methods

(2013) Dayana E. Salas-Leiva et al.   ANNALS OF BOTANY

Influence of the geological history of the Trans-Mexican Volcanic Belt on the diversification ofNolina parviflora(Asparagaceae: Nolinoideae)

(2013) Eduardo Ruiz-Sanchez et al.   JOURNAL OF BIOGEOGRAPHY

The role of glacial cycles in promoting genetic diversity in the Neotropics: the case of cloud forests during the Last Glacial Maximum

(2013) Santiago Ramírez-Barahona et al.   Ecology and Evolution

Phylogeography Reveals Routes of Colonization of the Bark Beetle Dendroctonus approximatus Dietz in Mexico

(2012) H. Sanchez-Sanchez et al.   JOURNAL OF HEREDITY

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Pleistocene Speciation in the Genus Populus (Salicaceae)

(2012) Nicholas D. Levsen et al.   SYSTEMATIC BIOLOGY

Rate variation and estimation of divergence times using strict and relaxed clocks

(2011) Richard P Brown et al.   BMC EVOLUTIONARY BIOLOGY

Ephemeral Pleistocene woodlands connect the dots for highland rattlesnakes of the Crotalus intermedius group

(2011) Robert W. Bryson et al.   JOURNAL OF BIOGEOGRAPHY

Relative roles of Neogene vicariance and Quaternary climate change on the historical diversification of bunchgrass lizards (Sceloporus scalaris group) in Mexico

(2011) Robert W. Bryson et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Applications of next-generation sequencing to phylogeography and phylogenetics

(2011) John E. McCormack et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Cenozoic extinctions account for the low diversity of extant gymnosperms compared with angiosperms

(2011) Michael D. Crisp et al.   NEW PHYTOLOGIST

Recent Synchronous Radiation of a Living Fossil

(2011) N. S. Nagalingum et al.   SCIENCE

DensiTree: making sense of sets of phylogenetic trees

(2010) R. R. Bouckaert   BIOINFORMATICS

Individual growth, reproduction and population dynamics of Dioon merolae (Zamiaceae) under different leaf harvest histories in Central Chiapas, Mexico

(2010) Julia M. Lázaro-Zermeño et al.   FOREST ECOLOGY AND MANAGEMENT

Evolutionary drivers of phylogeographical diversity in the highlands of Mexico: a case study of the Crotalus triseriatus species group of montane rattlesnakes

(2010) Robert W. Bryson et al.   JOURNAL OF BIOGEOGRAPHY

Southward Pleistocene migration of Douglas-fir into Mexico: phylogeography, ecological niche modeling, and conservation of ‘rear edge’ populations

(2010) Paul F. Gugger et al.   NEW PHYTOLOGIST

Allozyme diversity levels in two congeneric Dioon spp. (Zamiaceae, Cycadales) with contrasting rarities

(2010) Dánae Cabrera-Toledo et al.   PLANT SYSTEMATICS AND EVOLUTION

Bayesian Inference of Species Trees from Multilocus Data

(2009) J. Heled et al.   MOLECULAR BIOLOGY AND EVOLUTION

Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates

(2009) M. E. Alfaro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene tree discordance, phylogenetic inference and the multispecies coalescent

(2009) James H. Degnan et al.   TRENDS IN ECOLOGY & EVOLUTION

Diversity and genetic structure of the endangered cycad Dioon sonorense (Zamiaceae) from Sonora, Mexico: Evolutionary and conservation implications

(2008) Jorge González-Astorga et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

Diversity and genetic structure of three species of Dioon Lindl. (Zamiaceae, Cycadales) from the Pacific seaboard of Mexico

(2008) JORGE GONZÁLEZ-ASTORGA et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Integrating paleoecology and genetics of bird populations in two sky island archipelagos

(2008) John E McCormack et al.   BMC BIOLOGY

Population dynamics of the Mexican cycadDioon eduleLindl. (Zamiaceae): life history stages and management impact

(2008) PABLO OCTAVIO-AGUILAR et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Heterozygote excess in ancient populations of the critically endangeredDioon caputoi(Zamiaceae, Cycadales) from central Mexico

(2008) DÁNAE CABRERA-TOLEDO et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

How well do we understand the overall backbone of cycad phylogeny? New insights from a large, multigene plastid data set

(2008) Jessie M. Zgurski et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Rates of Molecular Evolution Are Linked to Life History in Flowering Plants

(2008) S. A. Smith et al.   SCIENCE

Phylogenetic Relationships of the Neotropical Genus Dioon (Cycadales, Zamiaceae) Based on Nuclear and Chloroplast DNA Sequence Data

(2008) Dolores González et al.   SYSTEMATIC BOTANY

Reciprocal illumination of morphological characters upon a molecular hypothesis supports the proposal of a new species of cycad from Mexico

(2008) Fernando Nicolalde‐Morejón et al.   SYSTEMATICS AND BIODIVERSITY