Phylogeny of the cycads based on multiple single-copy nuclear genes: congruence of concatenated parsimony, likelihood and species tree inference methods

Reprint of: Using nuclear gene data for plant phylogenetics: Progress and prospects

(2013) Elizabeth A. Zimmer et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Does better taxon sampling help? A new phylogenetic hypothesis for Sepsidae (Diptera: Cyclorrhapha) based on 50 new taxa and the same old mitochondrial and nuclear markers

(2013) Lei Zhao et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Enhancing PCR Amplification of DNA from Recalcitrant Plant Specimens Using a Trehalose-Based Additive

(2013) Tharangamala Samarakoon et al.   Applications in Plant Sciences

A new cycad stem from the Cretaceous in Argentina and its phylogenetic relationships with other Cycadales

(2012) Leandro Carlos Alcides Martínez et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Highly conserved low-copy nuclear genes as effective markers for phylogenetic analyses in angiosperms

(2012) Ning Zhang et al.   NEW PHYTOLOGIST

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Dioonopsis Horiuchi et Kimura Leaves from the Eocene of Western North America: A Cycad Shared with the Paleogene of Japan

(2011) Boglárka Erdei et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Cenozoic extinctions account for the low diversity of extant gymnosperms compared with angiosperms

(2011) Michael D. Crisp et al.   NEW PHYTOLOGIST

Recent Synchronous Radiation of a Living Fossil

(2011) N. S. Nagalingum et al.   SCIENCE

Late Palaeozoic Foliage from China Displays Affinities to Cycadales Rather than to Bennettitales Necessitating a Re-Evaluation of the PalaeozoicPterophyllumSpecies

(2010) Christian Pott et al.   ACTA PALAEONTOLOGICA POLONICA

BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis

(2010) Bret R. Larget et al.   BIOINFORMATICS

A character-based approach in the Mexican cycads supports diverse multigene combinations for DNA barcoding

(2010) Fernando Nicolalde-Morejón et al.   CLADISTICS

S-DIVA (Statistical Dispersal-Vicariance Analysis): A tool for inferring biogeographic histories

(2010) Yan Yu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

An Early Cretaceous zamiaceous cycad of South West Gondwana: Restrepophyllum nov. gen. from Patagonia, Argentina

(2010) Mauro G. Passalia et al.   REVIEW OF PALAEOBOTANY AND PALYNOLOGY

The Chicxulub Asteroid Impact and Mass Extinction at the Cretaceous-Paleogene Boundary

(2010) P. Schulte et al.   SCIENCE

Testing co-evolutionary hypotheses over geological timescales: interactions between Mesozoic non-avian dinosaurs and cycads

(2009) Richard J. Butler et al.   BIOLOGICAL REVIEWS

Paraphyly of organelle DNAs in Cycas Sect. Asiorientales due to ancient ancestral polymorphisms

(2009) Yu-Chung Chiang et al.   BMC EVOLUTIONARY BIOLOGY

Bayesian Inference of Species Trees from Multilocus Data

(2009) J. Heled et al.   MOLECULAR BIOLOGY AND EVOLUTION

Nuclear ribosomal spacer regions in plant phylogenetics: problems and prospects

(2009) Péter Poczai et al.   MOLECULAR BIOLOGY REPORTS

Tracking the evolutionary history of polyploidy in Fragaria L. (strawberry): New insights from phylogenetic analyses of low-copy nuclear genes

(2009) M. Rousseau-Gueutin et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Coalescent methods for estimating phylogenetic trees

(2009) Liang Liu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogeny of Veronica in the Southern and Northern Hemispheres based on plastid, nuclear ribosomal and nuclear low-copy DNA

(2009) Dirk C. Albach et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

High nrDNA ITS polymorphism in the ancient extant seed plant Cycas: Incomplete concerted evolution and the origin of pseudogenes

(2009) Long-Qian Xiao et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Pseudodioon akyoli gen. et sp. nov., an extinct member of Cycadales from the Turkish Miocene

(2009) Boglárka Erdei et al.   PLANT SYSTEMATICS AND EVOLUTION

Phylogenetic Analysis of Seven WRKY Genes across the Palm Subtribe Attaleinae (Arecaceae) Identifies Syagrus as Sister Group of the Coconut

(2009) Alan W. Meerow et al.   PLoS One

Gene tree discordance, phylogenetic inference and the multispecies coalescent

(2009) James H. Degnan et al.   TRENDS IN ECOLOGY & EVOLUTION

BEST: Bayesian estimation of species trees under the coalescent model

(2008) L. Liu   BIOINFORMATICS

DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony

(2008) A. Wehe et al.   BIOINFORMATICS

Molecular Phylogenetic Studies of Caribbean Palms (Arecaceae) and Their Relationships to Biogeography and Conservation

(2008) Julissa Roncal et al.   BOTANICAL REVIEW

ESTIMATING SPECIES TREES USING MULTIPLE-ALLELE DNA SEQUENCE DATA

(2008) Liang Liu et al.   EVOLUTION

How well do we understand the overall backbone of cycad phylogeny? New insights from a large, multigene plastid data set

(2008) Jessie M. Zgurski et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

An early Cenozoic perspective on greenhouse warming and carbon-cycle dynamics

(2008) James C. Zachos et al.   NATURE

In vitro digestibility of fern and gymnosperm foliage: implications for sauropod feeding ecology and diet selection

(2008) J. Hummel et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Morphology and ecology of the Antarcticycas plant

(2008) Elizabeth J. Hermsen et al.   REVIEW OF PALAEOBOTANY AND PALYNOLOGY

Maximum Likelihood Inference of Geographic Range Evolution by Dispersal, Local Extinction, and Cladogenesis

(2008) Richard H. Ree et al.   SYSTEMATIC BIOLOGY

Phylogenetic Relationships of the Neotropical Genus Dioon (Cycadales, Zamiaceae) Based on Nuclear and Chloroplast DNA Sequence Data

(2008) Dolores González et al.   SYSTEMATIC BOTANY