Automatic Detection of Key Innovations, Rate Shifts, and Diversity-Dependence on Phylogenetic Trees

A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes

(2013) R Pyron et al.   BMC EVOLUTIONARY BIOLOGY

Recovering speciation and extinction dynamics based on phylogenies

(2013) T. Stadler   JOURNAL OF EVOLUTIONARY BIOLOGY

Rates of speciation and morphological evolution are correlated across the largest vertebrate radiation

(2013) Daniel L. Rabosky et al.   Nature Communications

A Conceptual and Statistical Framework for Adaptive Radiations with a Key Role for Diversity Dependence

(2012) Rampal S. Etienne et al.   AMERICAN NATURALIST

Evolutionary Inferences from Phylogenies: A Review of Methods

(2012) Brian C. O'Meara   Annual Review of Ecology Evolution and Systematics

The reconstructed evolutionary process with the fossil record

(2012) Gilles Didier et al.   JOURNAL OF THEORETICAL BIOLOGY

The global diversity of birds in space and time

(2012) W. Jetz et al.   NATURE

Ecological opportunity and sexual selection together predict adaptive radiation

(2012) Catherine E. Wagner et al.   NATURE

Ecological and evolutionary determinants for the adaptive radiation of the Madagascan vangas

(2012) K. A. Jonsson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Clade Age and Species Richness Are Decoupled Across the Eukaryotic Tree of Life

(2012) Daniel L. Rabosky et al.   PLOS BIOLOGY

A Bayesian framework to estimate diversification rates and their variation through time and space

(2011) Daniele Silvestro et al.   BMC EVOLUTIONARY BIOLOGY

A NOVEL COMPARATIVE METHOD FOR IDENTIFYING SHIFTS IN THE RATE OF CHARACTER EVOLUTION ON TREES

(2011) Jonathan M. Eastman et al.   EVOLUTION

Inferring Speciation and Extinction Rates under Different Sampling Schemes

(2011) S. Hohna et al.   MOLECULAR BIOLOGY AND EVOLUTION

Multiple routes to mammalian diversity

(2011) Chris Venditti et al.   NATURE

Reconciling molecular phylogenies with the fossil record

(2011) H. Morlon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mammalian phylogeny reveals recent diversification rate shifts

(2011) T. Stadler   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity-dependence brings molecular phylogenies closer to agreement with the fossil record

(2011) R. S. Etienne et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Testing for Temporal Variation in Diversification Rates When Sampling is Incomplete and Nonrandom

(2011) Chad D. Brock et al.   SYSTEMATIC BIOLOGY

Testing the time-for-speciation effect in the assembly of regional biotas

(2011) Daniel L. Rabosky   Methods in Ecology and Evolution

Phylogenetic Insights on Adaptive Radiation

(2010) Richard E. Glor   Annual Review of Ecology Evolution and Systematics

TIME-DEPENDENT SPECIATION AND EXTINCTION FROM PHYLOGENIES: A LEAST SQUARES APPROACH

(2010) Emmanuel Paradis   EVOLUTION

Equilibrium speciation dynamics in a model adaptive radiation of island lizards

(2010) D. L. Rabosky et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity versus disparity and the radiation of modern cetaceans

(2010) G. J. Slater et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Shifting Balance of Diversity Among Major Marine Animal Groups

(2010) J. Alroy   SCIENCE

Quantitative Traits and Diversification

(2010) Richard G. FitzJohn   SYSTEMATIC BIOLOGY

Primary Controls on Species Richness in Higher Taxa

(2010) Daniel L. Rabosky   SYSTEMATIC BIOLOGY

Slowdowns in Diversification Rates from Real Phylogenies May Not be Real

(2010) Natalie Cusimano et al.   SYSTEMATIC BIOLOGY

Diversity dynamics: molecular phylogenies need the fossil record

(2010) Tiago B. Quental et al.   TRENDS IN ECOLOGY & EVOLUTION

Inferring the Dynamics of Diversification: A Coalescent Approach

(2010) Hélène Morlon et al.   PLOS BIOLOGY

EXTINCTION DURING EVOLUTIONARY RADIATIONS: RECONCILING THE FOSSIL RECORD WITH MOLECULAR PHYLOGENIES

(2009) Tiago B. Quental et al.   EVOLUTION

EXTINCTION RATES SHOULD NOT BE ESTIMATED FROM MOLECULAR PHYLOGENIES

(2009) Daniel L. Rabosky   EVOLUTION

Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates

(2009) M. E. Alfaro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Estimating Trait-Dependent Speciation and Extinction Rates from Incompletely Resolved Phylogenies

(2009) Richard G. FitzJohn et al.   SYSTEMATIC BIOLOGY

Radiation of Extant Cetaceans Driven by Restructuring of the Oceans

(2009) Mette E. Steeman et al.   SYSTEMATIC BIOLOGY

The Ecological Dynamics of Clade Diversification and Community Assembly

(2008) Mark A. McPeek   AMERICAN NATURALIST

EXPLOSIVE EVOLUTIONARY RADIATIONS: DECREASING SPECIATION OR INCREASING EXTINCTION THROUGH TIME?

(2008) Daniel L. Rabosky et al.   EVOLUTION

DETECTION OF “PUNCTUATED EQUILIBRIUM” BY BAYESIAN ESTIMATION OF SPECIATION AND EXTINCTION RATES, ANCESTRAL CHARACTER STATES, AND RATES OF ANAGENETIC AND CLADOGENETIC EVOLUTION ON A MOLECULAR PHYLOGENY

(2008) Folmer Bokma   EVOLUTION

Dynamics of origination and extinction in the marine fossil record

(2008) J. Alroy   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Density-dependent diversification in North American wood warblers

(2008) D. L Rabosky et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Density-Dependent Cladogenesis in Birds

(2008) Albert B Phillimore et al.   PLOS BIOLOGY