How Well Can We Detect Lineage-Specific Diversification-Rate Shifts? A Simulation Study of Sequential AIC Methods

geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees

(2014) Matthew W. Pennell et al.   BIOINFORMATICS

Automatic Detection of Key Innovations, Rate Shifts, and Diversity-Dependence on Phylogenetic Trees

(2014) Daniel L. Rabosky   PLoS One

Likelihood Inference of Non-Constant Diversification Rates with Incomplete Taxon Sampling

(2014) Sebastian Höhna   PLoS One

Using an Epidemiological Model for Phylogenetic Inference Reveals Density Dependence in HIV Transmission

(2013) Gabriel E. Leventhal et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenetic estimates of speciation and extinction rates for testing ecological and evolutionary hypotheses

(2013) R. Alexander Pyron et al.   TRENDS IN ECOLOGY & EVOLUTION

A Conceptual and Statistical Framework for Adaptive Radiations with a Key Role for Diversity Dependence

(2012) Rampal S. Etienne et al.   AMERICAN NATURALIST

IS YOUR PHYLOGENY INFORMATIVE? MEASURING THE POWER OF COMPARATIVE METHODS

(2012) Carl Boettiger et al.   EVOLUTION

Inferring Speciation and Extinction Rates under Different Sampling Schemes

(2011) S. Hohna et al.   MOLECULAR BIOLOGY AND EVOLUTION

Reconciling molecular phylogenies with the fossil record

(2011) H. Morlon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mammalian phylogeny reveals recent diversification rate shifts

(2011) T. Stadler   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity-dependence brings molecular phylogenies closer to agreement with the fossil record

(2011) R. S. Etienne et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylogenetic Inference of Reciprocal Effects between Geographic Range Evolution and Diversification

(2011) Emma E. Goldberg et al.   SYSTEMATIC BIOLOGY

Sampling-through-time in birth–death trees

(2010) Tanja Stadler   JOURNAL OF THEORETICAL BIOLOGY

Quantitative Traits and Diversification

(2010) Richard G. FitzJohn   SYSTEMATIC BIOLOGY

Inferring the Dynamics of Diversification: A Coalescent Approach

(2010) Hélène Morlon et al.   PLOS BIOLOGY

EXTINCTION RATES SHOULD NOT BE ESTIMATED FROM MOLECULAR PHYLOGENIES

(2009) Daniel L. Rabosky   EVOLUTION

A Bayesian approach for evaluating the impact of historical events on rates of diversification

(2009) B. R. Moore et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates

(2009) M. E. Alfaro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

EXPLOSIVE EVOLUTIONARY RADIATIONS: DECREASING SPECIATION OR INCREASING EXTINCTION THROUGH TIME?

(2008) Daniel L. Rabosky et al.   EVOLUTION