Genomic Tools and Selective Breeding in Molluscs

Genomic prediction using DArT-Seq technology for yellowtail kingfish Seriola lalandi

(2018) Nguyen H. Nguyen et al.   BMC GENOMICS

Genome-Wide Association and Genomic Selection for Resistance to Amoebic Gill Disease in Atlantic Salmon

(2018) Diego Robledo et al.   G3-Genes Genomes Genetics

The Whole-Genome and Transcriptome of the Manila Clam (Ruditapes philippinarum)

(2017) Seyoung Mun et al.   Genome Biology and Evolution

Construction of the First High-Density Genetic Linkage Map and Analysis of Quantitative Trait Loci for Growth-Related Traits in Sinonovacula constricta

(2017) Donghong Niu et al.   MARINE BIOTECHNOLOGY

Applications of genotyping by sequencing in aquaculture breeding and genetics

(2017) Diego Robledo et al.   Reviews in Aquaculture

Scallop genome reveals molecular adaptations to semi-sessile life and neurotoxins

(2017) Yuli Li et al.   Nature Communications

Development of a Medium Density Combined-Species SNP Array for Pacific and European Oysters ( Crassostrea gigas and Ostrea edulis )

(2017) Alejandro P. Gutierrez et al.   G3-Genes Genomes Genetics

Genotype Imputation To Improve the Cost-Efficiency of Genomic Selection in Farmed Atlantic Salmon

(2017) Hsin-Yuan Tsai et al.   G3-Genes Genomes Genetics

Similar Genetic Architecture with Shared and Unique Quantitative Trait Loci for Bacterial Cold Water Disease Resistance in Two Rainbow Trout Breeding Populations

(2017) Roger L. Vallejo et al.   Frontiers in Genetics

Scallop genome provides insights into evolution of bilaterian karyotype and development

(2017) Shi Wang et al.   Nature Ecology & Evolution

Construction and evaluation of a high-density SNP array for the Pacific oyster (Crassostrea gigas)

(2017) Haigang Qi et al.   PLoS One

Construction of a High-Density Genetic Map and Quantitative Trait Locus Mapping in the Manila clam Ruditapes philippinarum

(2017) Hongtao Nie et al.   Scientific Reports

Genetic mapping and quantitative trait loci analysis of growth-related traits in the small abalone Haliotis diversicolor using restriction-site-associated DNA sequencing

(2016) Peng Ren et al.   AQUACULTURE

Improvements in desirable traits of the Pacific oyster, Crassostrea gigas , as a result of five generations of selection on the West Coast, USA

(2016) Claudio Manoel Rodrigues de Melo et al.   AQUACULTURE

Performance of selectively-bred lines of eastern oyster, Crassostrea virginica , across eastern US estuaries

(2016) Dina A. Proestou et al.   AQUACULTURE

Are strain genetic effect and heterosis expression altered with culture system and rearing environment in the Portuguese oyster (Crassostrea angulata )?

(2016) Vu Van In et al.   AQUACULTURE RESEARCH

Gene expression comparison of resistant and susceptible Atlantic salmon fry challenged with Infectious Pancreatic Necrosis virus reveals a marked contrast in immune response

(2016) Diego Robledo et al.   BMC GENOMICS

Genetic load in marine animals: a review

(2016) Louis V. Plough   Current Zoology

Genetic inviability is a major driver of type III survivorship in experimental families of a highly fecund marine bivalve

(2016) L. V. Plough et al.   MOLECULAR ECOLOGY

Selection response in fish and shellfish: a review

(2016) Trygve Gjedrem et al.   Reviews in Aquaculture

A High-Density SNP Genetic Linkage Map and QTL Analysis of Growth-Related Traits in a Hybrid Family of Oysters ( Crassostrea gigas × Crassostrea angulata ) Using Genotyping-by-Sequencing

(2016) Jinpeng Wang et al.   G3-Genes Genomes Genetics

Genomic Prediction of Resistance to Pasteurellosis in Gilthead Sea Bream (Sparus aurata) Using 2b-RAD Sequencing

(2016) C. Palaiokostas et al.   G3-Genes Genomes Genetics

Genetic load in marine animals: a review

(2016) Louis V. Plough   Current Zoology

Bivalve-specific gene expansion in the pearl oyster genome: implications of adaptation to a sessile lifestyle

(2016) Takeshi Takeuchi et al.   Zoological Letters

Genetic Variation and Breeding Signature in Mass Selection Lines of the Pacific Oyster (Crassostrea gigas) Assessed by SNP Markers

(2016) Xiaoxiao Zhong et al.   PLoS One

Correction: A First Insight into the Genome of the Filter-Feeder Mussel Mytilus galloprovincialis

(2016) Maria Murgarella et al.   PLoS One

Evaluation of the 2b-RAD method for genomic selection in scallop breeding

(2016) Jinzhuang Dou et al.   Scientific Reports

Construction of a high-density genetic map and QTL mapping for pearl quality-related traits in Hyriopsis cumingii

(2016) Zhi-Yi Bai et al.   Scientific Reports

Genetic parameters and selection responses for growth and survival of the small abalone Haliotis diversicolor after four generations of successive selection

(2015) Jianyong Liu et al.   AQUACULTURE

Mass selection for survival and resistance to OsHV-1 infection in Crassostrea gigas spat in field conditions: response to selection after four generations

(2015) Lionel Dégremont et al.   AQUACULTURE

Constructing a microsatellite-based linkage map and identifying QTL for pearl quality traits in triangle pearl mussel (Hyriopsis cumingii)

(2015) Zhiyi Bai et al.   AQUACULTURE

Can survival of European flat oysters following experimental infection with Bonamia ostreae be predicted using QTLs?

(2015) Estelle Harrang et al.   AQUACULTURE

Genome-wide association analysis reveals loci associated with resistance against Piscirickettsia salmonis in two Atlantic salmon (Salmo salar L.) chromosomes

(2015) Katharina Correa et al.   BMC GENOMICS

Genome wide association and genomic prediction for growth traits in juvenile farmed Atlantic salmon using a high density SNP array

(2015) Hsin-Yuan Tsai et al.   BMC GENOMICS

Genetic load, inbreeding depression, and hybrid vigor covary with population size: An empirical evaluation of theoretical predictions

(2015) Jennifer N. Lohr et al.   EVOLUTION

Immune and stress responses in oysters with insights on adaptation

(2015) Ximing Guo et al.   FISH & SHELLFISH IMMUNOLOGY

Transcriptome analysis reveals strong and complex antiviral response in a mollusc

(2015) Yan He et al.   FISH & SHELLFISH IMMUNOLOGY

Genetic improvement for important farmed aquaculture species with a reference to carp, tilapia and prawns in Asia: achievements, lessons and challenges

(2015) Nguyen Hong Nguyen   FISH AND FISHERIES

Epithelial Cadherin Determines Resistance to Infectious Pancreatic Necrosis Virus in Atlantic Salmon

(2015) Thomas Moen et al.   GENETICS

How many markers are enough? Factors influencing parentage testing in different livestock populations

(2015) E.M. Strucken et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Copy number variation at the GL7 locus contributes to grain size diversity in rice

(2015) Yuexing Wang et al.   NATURE GENETICS

Second-Generation Linkage Maps for the Pacific Oyster Crassostrea gigas Reveal Errors in Assembly of Genome Scaffolds

(2015) Dennis Hedgecock et al.   G3-Genes Genomes Genetics

Epithelial Cadherin Determines Resistance to Infectious Pancreatic Necrosis Virus in Atlantic Salmon

(2015) Thomas Moen et al.   GENETICS

Genomics in aquaculture to better understand species biology and accelerate genetic progress

(2015) José M. Yáñez et al.   Frontiers in Genetics

Genome-Wide Association Study (GWAS) for Growth Rate and Age at Sexual Maturation in Atlantic Salmon (Salmo salar)

(2015) Alejandro P. Gutierrez et al.   PLoS One

Identification and mapping of a SCAR marker linked to a locus involved in shell pigmentation of the Pacific oyster (Crassostrea gigas)

(2014) Jianlong Ge et al.   AQUACULTURE

Determining genetic contributions to host oyster shell growth: Quantitative trait loci and genetic association analysis for the silver-lipped pearl oyster, Pinctada maxima

(2014) David B. Jones et al.   AQUACULTURE

Quantitative trait loci and genetic association analysis reveals insights into complex pearl quality traits in donor silver-lipped pearl oysters

(2014) David B. Jones et al.   AQUACULTURE

High-density single nucleotide polymorphisms linkage and quantitative trait locus mapping of the pearl oyster, Pinctada fucata martensii Dunker

(2014) Yaohua Shi et al.   AQUACULTURE

QTL mapping for glycogen content and shell pigmentation in the Pacific oyster Crassostrea gigas using microsatellites and SNPs

(2014) Xiaoxiao Zhong et al.   AQUACULTURE INTERNATIONAL

Development of SNP-genotyping arrays in two shellfish species

(2014) S. Lapègue et al.   Molecular Ecology Resources

Comparative population genomics in animals uncovers the determinants of genetic diversity

(2014) J. Romiguier et al.   NATURE

Genetic improvement of New Zealand aquaculture species: programmes, progress and prospects

(2014) MD Camara et al.   NEW ZEALAND JOURNAL OF MARINE AND FRESHWATER RESEARCH

Genetic Mapping and QTL Analysis of Growth-Related Traits in Pinctada fucata Using Restriction-Site Associated DNA Sequencing

(2014) Yaoguo Li et al.   PLoS One

Potential for marker-assisted selection for forest tree breeding: lessons from 20 years of MAS in crops

(2014) H. Muranty et al.   Tree Genetics & Genomes

Saturation-state sensitivity of marine bivalve larvae to ocean acidification

(2014) George G. Waldbusser et al.   Nature Climate Change

Genetic considerations for mollusk production in aquaculture: current state of knowledge

(2014) Marcela P. Astorga   Frontiers in Genetics

Parentage assignment with genomic markers: a major advance for understanding and exploiting genetic variation of quantitative traits in farmed aquatic animals

(2014) Marc Vandeputte et al.   Frontiers in Genetics

Genetic parameters and response to selection in blue mussel (Mytilus galloprovincialis) using a SNP-based pedigree

(2013) Thuy T.T. Nguyen et al.   AQUACULTURE

Heritability estimates for growth-related traits in the Pacific oyster (Crassostrea gigas) using a molecular pedigree

(2013) Ning Kong et al.   AQUACULTURE RESEARCH

Multiplex PCR sets of novel microsatellite loci for the great scallopPecten maximusand their application in parentage assignment

(2013) Romain Morvezen et al.   AQUATIC LIVING RESOURCES

A high-density SNP genetic linkage map for the silver-lipped pearl oyster, Pinctada maxima: a valuable resource for gene localisation and marker-assisted selection

(2013) David B Jones et al.   BMC GENOMICS

High-Resolution Linkage and Quantitative Trait Locus Mapping Aided by Genome Survey Sequencing: Building Up An Integrative Genomic Framework for a Bivalve Mollusc

(2013) W. Jiao et al.   DNA RESEARCH

Phylogenetic Patterns and Phenotypic Plasticity of Molluscan Sexual Systems

(2013) R. Collin   INTEGRATIVE AND COMPARATIVE BIOLOGY

Transcriptome-Wide Single Nucleotide Polymorphisms (SNPs) for Abalone (Haliotis midae): Validation and Application Using GoldenGate Medium-Throughput Genotyping Assays

(2013) Aletta Bester-Van Der Merwe et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Experimental Effects of Temperature and Photoperiod on Synchrony of Gametogenesis and Sex Ratio in the European OysterOstrea edulis(Linnaeus)

(2013) Alyssa Joyce et al.   JOURNAL OF SHELLFISH RESEARCH

Integrated Linkage Map ofHaliotis midaeLinnaeus Based on Microsatellite and SNP Markers

(2013) Jessica Vervalle et al.   JOURNAL OF SHELLFISH RESEARCH

A High Load of Non-neutral Amino-Acid Polymorphisms Explains High Protein Diversity Despite Moderate Effective Population Size in a Marine Bivalve With Sweepstakes Reproduction

(2013) Estelle Harrang et al.   G3-Genes Genomes Genetics

Accelerating Improvement of Livestock with Genomic Selection

(2013) Theo Meuwissen et al.   Annual Review of Animal Biosciences

A first-generation linkage map of the Pacific lion-paw scallop (Nodipecten subnodosus): Initial evidence of QTL for size traits and markers linked to orange shell color

(2012) Jessica L. Petersen et al.   AQUACULTURE

Donor-oyster derived heritability estimates and the effect of genotype×environment interaction on the production of pearl quality traits in the silver-lip pearl oyster, Pinctada maxima

(2012) Dean R. Jerry et al.   AQUACULTURE

Evaluation of the progeny of the fourth-generation Sydney rock oyster Saccostrea glomerata (Gould, 1850) breeding lines for resistance to QX disease (Marteilia sydneyi) and winter mortality (Bonamia roughleyi)

(2012) Michael C Dove et al.   AQUACULTURE RESEARCH

Acclimation-dependent expression of heat shock protein 70 in Pacific abalone (Haliotis discus hannai Ino) and its acute response to thermal exposure

(2012) Jiaqi Li et al.   CHINESE JOURNAL OF OCEANOLOGY AND LIMNOLOGY

Draft Genome of the Pearl Oyster Pinctada fucata: A Platform for Understanding Bivalve Biology

(2012) T. Takeuchi et al.   DNA RESEARCH

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

2b-RAD: a simple and flexible method for genome-wide genotyping

(2012) Shi Wang et al.   NATURE METHODS

Inbreeding rate modifies the dynamics of genetic load in small populations

(2012) Nina Pekkala et al.   Ecology and Evolution

Evidence of herpesvirus (OsHV-1) resistance in juvenile Crassostrea gigas selected for high resistance to the summer mortality phenomenon

(2011) Lionel Dégremont   AQUACULTURE

Sweepstakes Reproductive Success in Highly Fecund Marine Fish and Shellfish: A Review and Commentary

(2011) Dennis Hedgecock et al.   BULLETIN OF MARINE SCIENCE

Selection response and realized heritability for growth in three stocks of the Pacific oyster Crassostrea gigas

(2011) Qi Li et al.   FISHERIES SCIENCE

Quantitative Trait Locus Analysis of Stage-Specific Inbreeding Depression in the Pacific OysterCrassostrea gigas

(2011) Louis V. Plough et al.   GENETICS

Use of a microsatellite-based pedigree in estimation of heritabilities for economic traits in Australian blue mussel, Mytilus galloprovincialis

(2011) T.T.T. Nguyen et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Genetic Mapping and QTL Analysis of Growth-Related Traits in the Pacific Oyster

(2011) Xiang Guo et al.   MARINE BIOTECHNOLOGY

Current trends in microsatellite genotyping

(2011) E. GUICHOUX et al.   Molecular Ecology Resources

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Intraspecies and interspecies hybrids in Haliotis: natural and experimental evidence and its impact on abalone aquaculture

(2011) Fabiola Lafarga de la Cruz et al.   Reviews in Aquaculture

QTL for resistance to summer mortality and OsHV-1 load in the Pacific oyster (Crassostrea gigas)

(2010) C. Sauvage et al.   ANIMAL GENETICS

Population and family growth response to different rearing location, heritability estimates and genotype×environment interaction in the silver-lip pearl oyster (Pinctada maxima)

(2010) Renate Kvingedal et al.   AQUACULTURE

Heterosis and combining ability: a diallel cross of three geographically isolated populations of Pacific abalone Haliotis discus hannai Ino

(2010) Yuewen Deng et al.   CHINESE JOURNAL OF OCEANOLOGY AND LIMNOLOGY

Variance in the reproductive success of flat oyster Ostrea edulis L. assessed by parentage analyses in natural and experimental conditions

(2010) D. LALLIAS et al.   Genetics Research

Confirmation and fine-mapping of a major QTL for resistance to infectious pancreatic necrosis in Atlantic salmon (Salmo salar): population-level associations between markers and trait

(2009) Thomas Moen et al.   BMC GENOMICS

Combining Two-Stage Testing and Interval Mapping Strategies to Detect QTL for Resistance to Bonamiosis in the European Flat Oyster Ostrea edulis

(2009) D. Lallias et al.   MARINE BIOTECHNOLOGY

The genetics of inbreeding depression

(2009) Deborah Charlesworth et al.   NATURE REVIEWS GENETICS

Major Quantitative Trait Loci Affect Resistance to Infectious Pancreatic Necrosis in Atlantic Salmon (Salmo salar)

(2008) R. D. Houston et al.   GENETICS

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One