Potential for marker-assisted selection for forest tree breeding: lessons from 20 years of MAS in crops

Sequencing and Assembly of the 22-Gb Loblolly Pine Genome

(2014) A. Zimin et al.   GENETICS

Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies

(2014) David B Neale et al.   GENOME BIOLOGY

Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data

(2013) Inanc Birol et al.   BIOINFORMATICS

The Norway spruce genome sequence and conifer genome evolution

(2013) Björn Nystedt et al.   NATURE

Genomic Selection: Status in Different Species and Challenges for Breeding

(2013) KF Stock et al.   REPRODUCTION IN DOMESTIC ANIMALS

Mining conifers’ mega-genome using rapid and efficient multiplexed high-throughput genotyping-by-sequencing (GBS) SNP discovery platform

(2013) Charles Chen et al.   Tree Genetics & Genomes

Does genomic selection have a future in plant breeding?

(2013) Elisabeth Jonas et al.   TRENDS IN BIOTECHNOLOGY

Accuracy of Genomic Selection Methods in a Standard Data Set of Loblolly Pine (Pinus taeda L.)

(2012) M. F. R. Resende et al.   GENETICS

Genome-wide association genetics of an adaptive trait in lodgepole pine

(2012) THOMAS L. PARCHMAN et al.   MOLECULAR ECOLOGY

Genomic selection for growth and wood quality in Eucalyptus: capturing the missing heritability and accelerating breeding for complex traits in forest trees

(2012) Marcos D. V. Resende et al.   NEW PHYTOLOGIST

Genomic selection in French dairy cattle

(2012) D. Boichard et al.   Animal Production Science

A case study of Eucalyptus globulus fingerprinting for breeding

(2011) Maria Margarida Ribeiro et al.   ANNALS OF FOREST SCIENCE

Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine

(2011) Emilie Chancerel et al.   BMC GENOMICS

Variation in actual relationship as a consequence of Mendelian sampling and linkage

(2011) W.G. HILL et al.   Genetics Research

Novel strategies to minimize progeny inbreeding while maximizing genetic gain using genomic information

(2011) J.E. Pryce et al.   JOURNAL OF DAIRY SCIENCE

On statistical methods for estimating heritability in wild populations

(2011) MIKKO J. SILLANPÄÄ   MOLECULAR ECOLOGY

Application of a high-speed breeding technology to apple (Malus × domestica) based on transgenic early flowering plants and marker-assisted selection

(2011) Henryk Flachowsky et al.   NEW PHYTOLOGIST

Accelerating the domestication of trees using genomic selection: accuracy of prediction models across ages and environments

(2011) M. F. R. Resende et al.   NEW PHYTOLOGIST

Survey of the genetic information carried in the genome of Eucalyptus camaldulensis

(2011) Hideki Hirakawa et al.   Plant Biotechnology

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Breeding without Breeding: Is a Complete Pedigree Necessary for Efficient Breeding?

(2011) Yousry A. El-Kassaby et al.   PLoS One

Prospects for genomic selection in conifer breeding: a simulation study of Cryptomeria japonica

(2011) Hiroyoshi Iwata et al.   Tree Genetics & Genomes

Meta-analysis of results from quantitative trait loci mapping studies on pig chromosome 4

(2010) K. M. Silva et al.   ANIMAL GENETICS

Patterns of Population Structure and Environmental Associations to Aridity Across the Range of Loblolly Pine (Pinus taeda L., Pinaceae)

(2010) A. J. Eckert et al.   GENETICS

Optimum contribution selection using traditional best linear unbiased prediction and genomic breeding values in aquaculture breeding schemes

(2010) H. M. Nielsen et al.   JOURNAL OF ANIMAL SCIENCE

Marker-assisted improvement of bacterial blight resistance in parental lines of Pusa RH10, a superfine grain aromatic rice hybrid

(2010) S. H. Basavaraj et al.   MOLECULAR BREEDING

Molecular marker-assisted breeding options for maize improvement in Asia

(2010) B. M. Prasanna et al.   MOLECULAR BREEDING

Meta-analysis of QTL involved in silage quality of maize and comparison with the position of candidate genes

(2010) M. Truntzler et al.   THEORETICAL AND APPLIED GENETICS

Genomic selection in forest tree breeding

(2010) Dario Grattapaglia et al.   Tree Genetics & Genomes

Crop genome sequencing: lessons and rationales

(2010) Catherine Feuillet et al.   TRENDS IN PLANT SCIENCE

Targeted isolation, sequence assembly and characterization of two white spruce (Picea glauca) BAC clones for terpenoid synthase and cytochrome P450 genes involved in conifer defence reveal insights into a conifer genome

(2009) Björn Hamberger et al.   BMC PLANT BIOLOGY

Molecular markers for the identification of resistance genes and marker-assisted selection in breeding wheat for leaf rust resistance

(2009) Gyula Vida et al.   EUPHYTICA

Marker assisted backcross breeding to improve cooking quality traits in Myanmar rice cultivar Manawthukha

(2009) Myint Yi et al.   FIELD CROPS RESEARCH

Breeding without breeding

(2009) YOUSRY A. El-KASSABY et al.   Genetics Research

Genealogical Relationship among Members of Selection and Production Populations of Yellow Cedar (Callitropsis nootkatensis [D. Don] Oerst.) in the Absence of Parental Information

(2009) N. Massah et al.   JOURNAL OF HEREDITY

Using RAPD markers to predict polyphenol content in aerial parts ofEchinacea purpureaplants

(2009) Chung Li Chen et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Genome Project Standards in a New Era of Sequencing

(2009) P. S. G. Chain et al.   SCIENCE

An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment

(2009) Péter Szűcs et al.   Plant Genome

Challenges for effective marker-assisted selection in plants

(2008) Frédéric Hospital   GENETICA

Linkage disequilibrium, genetic association mapping and gene localization in crop plants

(2008) Karim Sorkheh et al.   GENETICS AND MOLECULAR BIOLOGY

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE

Pyramiding QTLs to improve malting quality in barley: gains in phenotype and genetic diversity

(2008) Livinus Emebiri et al.   MOLECULAR BREEDING

Field evaluation of cotton near-isogenic lines introgressed with QTLs for productivity and drought related traits

(2008) Avishag Levi et al.   MOLECULAR BREEDING

Heritability in the genomics era — concepts and misconceptions

(2008) Peter M. Visscher et al.   NATURE REVIEWS GENETICS

Eucalyptusapplied genomics: from gene sequences to breeding tools

(2008) Dario Grattapaglia et al.   NEW PHYTOLOGIST

Enhanced tolerance to boron toxicity in two-rowed barley by marker-assisted introgression of favourable alleles derived from Sahara 3771

(2008) L. C. Emebiri et al.   PLANT AND SOIL

ISSR marker-assisted selection of male and female plants in a promising dioecious crop: jojoba (Simmondsia chinensis)

(2008) Kuldeep Sharma et al.   Plant Biotechnology Reports

Genomewide selection in oil palm: increasing selection gain per unit time and cost with small populations

(2008) C. K. Wong et al.   THEORETICAL AND APPLIED GENETICS