Bivalve-specific gene expansion in the pearl oyster genome: implications of adaptation to a sessile lifestyle
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Bivalve-specific gene expansion in the pearl oyster genome: implications of adaptation to a sessile lifestyle
Authors
Keywords
Pearl oyster, <em class=EmphasisTypeItalic >Pinctada fucata</em>, Genome, Hox, ParaHox, Heat shock proteins, C1q, Biomineralization
Journal
Zoological Letters
Volume 2, Issue 1, Pages -
Publisher
Springer Nature
Online
2016-02-19
DOI
10.1186/s40851-016-0039-2
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- The genome of the Pacific oyster Crassostrea gigas brings new insights on the massive expansion of the C1q gene family in Bivalvia
- (2015) Marco Gerdol et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Novel Genes Participating in the Formation of Prismatic and Nacreous Layers in the Pearl Oyster as Revealed by Their Tissue Distribution and RNA Interference Knockdown
- (2014) Daisuke Funabara et al. PLoS One
- Identification of an intact ParaHox cluster with temporal colinearity but altered spatial colinearity in the hemichordate Ptychodera flava
- (2013) Tetsuro Ikuta et al. BMC EVOLUTIONARY BIOLOGY
- Rapid evolution of pearl oyster shell matrix proteins with repetitive, low-complexity domains
- (2013) C. McDougall et al. Journal of the Royal Society Interface
- Large-scale gene function analysis with the PANTHER classification system
- (2013) Huaiyu Mi et al. Nature Protocols
- Genome-Wide Survey of Genes Encoding Muscle Proteins in the Pearl Oyster,Pinctada fucata
- (2013) Daisuke Funabara et al. ZOOLOGICAL SCIENCE
- Evolutionary Aspects of Variability in bHLH Orthologous Families: Insights from the Pearl Oyster,Pinctada fucata
- (2013) Fuki Gyoja et al. ZOOLOGICAL SCIENCE
- AnIn-silicoGenomic Survey to Annotate Genes Coding for Early Development-Relevant Signaling Molecules in the Pearl Oyster,Pinctada fucata
- (2013) Davin H. E. Setiamarga et al. ZOOLOGICAL SCIENCE
- Reproduction-Related Genes in the Pearl Oyster Genome
- (2013) Toshie Matsumoto et al. ZOOLOGICAL SCIENCE
- Initiating the Mollusk Genomics Annotation Community: Toward Creating the Complete Curated Gene-Set of the Japanese Pearl Oyster,Pinctada fucata
- (2013) Takeshi Kawashima et al. ZOOLOGICAL SCIENCE
- The Diversity of Shell Matrix Proteins: Genome-Wide Investigation of the Pearl Oyster,Pinctada fucata
- (2013) Hiroshi Miyamoto et al. ZOOLOGICAL SCIENCE
- A Genome-Wide Survey of Genes Encoding Transcription Factors in the Japanese Pearl Oyster,Pinctada fucata: I. Homeobox Genes
- (2013) Yoshiaki Morino et al. ZOOLOGICAL SCIENCE
- A Genome-Wide Survey of Genes Encoding Transcription Factors in Japanese Pearl OysterPinctada fucata:II. Tbx, Fox, Ets, HMG, NFκB, bZIP, and C2H2 Zinc Fingers
- (2013) Hiroyuki Koga et al. ZOOLOGICAL SCIENCE
- A History of the Cultured Pearl Industry
- (2013) Kiyohito Nagai ZOOLOGICAL SCIENCE
- A four-CRD C-type lectin from Chlamys farreri mediating nonself-recognition with broader spectrum and opsonization
- (2012) Mengmeng Huang et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- Draft Genome of the Pearl Oyster Pinctada fucata: A Platform for Understanding Bivalve Biology
- (2012) T. Takeuchi et al. DNA RESEARCH
- The shell-forming proteome ofLottia giganteareveals both deep conservations and lineage-specific novelties
- (2012) Benjamin Marie et al. FEBS Journal
- A novel C1qDC protein acting as pattern recognition receptor in scallop Argopecten irradians
- (2012) Leilei Wang et al. FISH & SHELLFISH IMMUNOLOGY
- The oyster genome reveals stress adaptation and complexity of shell formation
- (2012) Guofan Zhang et al. NATURE
- Insights into bilaterian evolution from three spiralian genomes
- (2012) Oleg Simakov et al. NATURE
- Different secretory repertoires control the biomineralization processes of prism and nacre deposition of the pearl oyster shell
- (2012) B. Marie et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Insights into the innate immunity of the Mediterranean mussel Mytilus galloprovincialis
- (2011) Paola Venier et al. BMC GENOMICS
- Coupling Proteomics and Transcriptomics for the Identification of Novel and Variant Forms of Mollusk Shell Proteins: A Study with P. margaritifera
- (2011) Sophie Berland et al. CHEMBIOCHEM
- The C1q domain containing proteins of the Mediterranean mussel Mytilus galloprovincialis: A widespread and diverse family of immune-related molecules
- (2011) Marco Gerdol et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- Deep Sequencing of ESTs from Nacreous and Prismatic Layer Producing Tissues and a Screen for Novel Shell Formation-Related Genes in the Pearl Oyster
- (2011) Shigeharu Kinoshita et al. PLoS One
- Identification of Genes Directly Involved in Shell Formation and Their Functions in Pearl Oyster, Pinctada fucata
- (2011) Dong Fang et al. PLoS One
- Scaffolding pre-assembled contigs using SSPACE
- (2010) Marten Boetzer et al. BIOINFORMATICS
- Transcriptome and proteome analysis of Pinctada margaritifera calcifying mantle and shell: focus on biomineralization
- (2010) Caroline Joubert et al. BMC GENOMICS
- AiC1qDC-1, a novel gC1q-domain-containing protein from bay scallop Argopecten irradians with fungi agglutinating activity
- (2010) Pengfei Kong et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- Evolutionary Patterns in Pearl Oysters of the Genus Pinctada (Bivalvia: Pteriidae)
- (2010) Regina L. Cunha et al. MARINE BIOTECHNOLOGY
- Evolutionary Dynamics of the wnt Gene Family: A Lophotrochozoan Perspective
- (2010) S.-J. Cho et al. MOLECULAR BIOLOGY AND EVOLUTION
- Towards a molecular phylogeny of Mollusks: Bivalves’ early evolution as revealed by mitochondrial genes
- (2010) Federico Plazzi et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Parallel Evolution of Nacre Building Gene Sets in Molluscs
- (2009) Daniel J. Jackson et al. MOLECULAR BIOLOGY AND EVOLUTION
- The sequence and de novo assembly of the giant panda genome
- (2009) Ruiqiang Li et al. NATURE
- An Acidic Matrix Protein, Pif, Is a Key Macromolecule for Nacre Formation
- (2009) M. Suzuki et al. SCIENCE
- Using native and syntenically mapped cDNA alignments to improve de novo gene finding
- (2008) Mario Stanke et al. BIOINFORMATICS
- Purification and antibacterial characterization of a novel isoform of the Manila clam lectin (MCL-4) from the plasma of the Manila clam, Ruditapes philippinarum
- (2008) Keisuke G. Takahashi et al. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY
- A novel C1q-domain-containing protein from Zhikong scallop Chlamys farreri with lipopolysaccharide binding activity
- (2008) H ZHANG et al. FISH & SHELLFISH IMMUNOLOGY
- Expression profiling and binding properties of fibrinogen-related proteins (FREPs), plasma proteins from the schistosome snail host Biomphalaria glabrata
- (2008) Si-Ming Zhang et al. Innate Immunity
- High sequence variability of myticin transcripts in hemocytes of immune-stimulated mussels suggests ancient host–pathogen interactions
- (2007) Alberto Pallavicini et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- A lectin (CfLec-2) aggregating Staphylococcus haemolyticus from scallop Chlamys farreri
- (2007) Peilin Zheng et al. FISH & SHELLFISH IMMUNOLOGY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now