Genetic load in marine animals: a review

Current hypotheses to explain genetic chaos under the sea

(2016) Bjarki Eldon et al.   Current Zoology

Genetic inviability is a major driver of type III survivorship in experimental families of a highly fecund marine bivalve

(2016) L. V. Plough et al.   MOLECULAR ECOLOGY

Harnessing the power of RADseq for ecological and evolutionary genomics

(2016) Kimberly R. Andrews et al.   NATURE REVIEWS GENETICS

Current hypotheses to explain genetic chaos under the sea

(2016) Bjarki Eldon et al.   Current Zoology

Local Adaptation by Alleles of Small Effect

(2015) Sam Yeaman   AMERICAN NATURALIST

A genetic linkage map of red drum (Sciaenops ocellatus) and comparison of chromosomal syntenies with four other fish species

(2015) Christopher M. Hollenbeck et al.   AQUACULTURE

Can survival of European flat oysters following experimental infection with Bonamia ostreae be predicted using QTLs?

(2015) Estelle Harrang et al.   AQUACULTURE

SNPGenie: estimating evolutionary parameters to detect natural selection using pooled next-generation sequencing data: Table 1.

(2015) Chase W. Nelson et al.   BIOINFORMATICS

Using neutral, selected, and hitchhiker loci to assess connectivity of marine populations in the genomic era

(2015) Pierre-Alexandre Gagnaire et al.   Evolutionary Applications

Construction of a high-density linkage map and fine mapping of QTL for growth in Asian seabass

(2015) Le Wang et al.   Scientific Reports

Second-Generation Linkage Maps for the Pacific Oyster Crassostrea gigas Reveal Errors in Assembly of Genome Scaffolds

(2015) Dennis Hedgecock et al.   G3-Genes Genomes Genetics

Nucleotide variation and balancing selection at theCkmagene in Atlantic cod: analysis with multiple merger coalescent models

(2015) Einar Árnason et al.   PeerJ

A ddRAD-based genetic map and its integration with the genome assembly of Japanese eel (Anguilla japonica) provides insights into genome evolution after the teleost-specific genome duplication

(2014) Wataru Kai et al.   BMC GENOMICS

Coalescence 2.0: a multiple branching of recent theoretical developments and their applications

(2014) Aurélien Tellier et al.   MOLECULAR ECOLOGY

Recent novel approaches for population genomics data analysis

(2014) Kimberly R. Andrews et al.   MOLECULAR ECOLOGY

The Development of a High Density Linkage Map for Black Tiger Shrimp (Penaeus monodon) Based on cSNPs

(2014) Matthew Baranski et al.   PLoS One

Detecting Selection in the Blue Crab, Callinectes sapidus, Using DNA Sequence Data from Multiple Nuclear Protein-Coding Genes

(2014) Bree K. Yednock et al.   PLoS One

A Genetic Linkage Map of Sole (Solea solea): A Tool for Evolutionary and Comparative Analyses of Exploited (Flat)Fishes

(2014) Eveline Diopere et al.   PLoS One

Construction of a Microsatellites-Based Linkage Map for the White Grouper ( Epinephelus aeneus )

(2014) Lior Dor et al.   G3-Genes Genomes Genetics

A genetic linkage map of the sea cucumber (Apostichopus japonicus) based on microsatellites and SNPs

(2013) Jingjing Yan et al.   AQUACULTURE

First genetic linkage map for comparative mapping and QTL screening of brill (Scophthalmus rhombus)

(2013) Miguel Hermida et al.   AQUACULTURE

High variance in reproductive success generates a false signature of a genetic bottleneck in populations of constant size: a simulation study

(2013) Sean M Hoban et al.   BMC BIOINFORMATICS

Why Time Matters: Codon Evolution and the Temporal Dynamics of dN/dS

(2013) Carina F. Mugal et al.   MOLECULAR BIOLOGY AND EVOLUTION

Analysis of DNA sequence variation within marine species using Beta-coalescents

(2013) Matthias Steinrücken et al.   THEORETICAL POPULATION BIOLOGY

A High Load of Non-neutral Amino-Acid Polymorphisms Explains High Protein Diversity Despite Moderate Effective Population Size in a Marine Bivalve With Sweepstakes Reproduction

(2013) Estelle Harrang et al.   G3-Genes Genomes Genetics

Mutation Load: The Fitness of Individuals in Populations Where Deleterious Alleles Are Abundant

(2012) Aneil F. Agrawal et al.   Annual Review of Ecology Evolution and Systematics

Transcriptome-based exon capture enables highly cost-effective comparative genomic data collection at moderate evolutionary scales

(2012) Ke Bi et al.   BMC GENOMICS

The Population Genomics of a Fast Evolver: High Levels of Diversity, Functional Constraint, and Molecular Adaptation in the Tunicate Ciona intestinalis

(2012) Georgia Tsagkogeorga et al.   Genome Biology and Evolution

MapDisto: fast and efficient computation of genetic linkage maps

(2012) Mathias Lorieux   MOLECULAR BREEDING

Environmental stress increases selection against and dominance of deleterious mutations in inbred families of the Pacific oysterCrassostrea gigas

(2012) LOUIS V. PLOUGH   MOLECULAR ECOLOGY

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

De novo mutations revealed by whole-exome sequencing are strongly associated with autism

(2012) Stephan J. Sanders et al.   NATURE

Generalized linear mixed model for segregation distortion analysis

(2011) Haimao Zhan et al.   BMC GENETICS

Exome-wide DNA capture and next generation sequencing in domestic and wild species

(2011) Ted Cosart et al.   BMC GENOMICS

Sweepstakes Reproductive Success in Highly Fecund Marine Fish and Shellfish: A Review and Commentary

(2011) Dennis Hedgecock et al.   BULLETIN OF MARINE SCIENCE

Quantitative Trait Locus Analysis of Stage-Specific Inbreeding Depression in the Pacific OysterCrassostrea gigas

(2011) Louis V. Plough et al.   GENETICS

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

Highly variable recessive lethal or nearly lethal mutation rates during germ-line development of male Drosophila melanogaster

(2011) J.-J. Gao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A genetic linkage map of red drum, Sciaenops ocellatus

(2010) D. S. Portnoy et al.   ANIMAL GENETICS

Development of a SNP resource and a genetic linkage map for Atlantic cod (Gadus morhua)

(2010) Sophie Hubert et al.   BMC GENOMICS

Variance in the reproductive success of flat oyster Ostrea edulis L. assessed by parentage analyses in natural and experimental conditions

(2010) D. LALLIAS et al.   Genetics Research

Development of Type I Genetic Markers from Expressed Sequence Tags in Highly Polymorphic Species

(2010) Woo-Jin Kim et al.   MARINE BIOTECHNOLOGY

Analysis of Genetic Inheritance in a Family Quartet by Whole-Genome Sequencing

(2010) J. C. Roach et al.   SCIENCE

Construction of microsatellite-based linkage maps and identification of size-related quantitative trait loci for Zhikong scallop (Chlamys farreri)

(2009) A. Zhan et al.   ANIMAL GENETICS

Gene Flow and Isolation among Populations of Marine Animals

(2009) Michael E. Hellberg   Annual Review of Ecology Evolution and Systematics

Construction of a Genetic Linkage Map and Mapping of a Female-Specific DNA Marker in Half-Smooth Tongue Sole (Cynoglossus semilaevis)

(2009) Xiaolin Liao et al.   MARINE BIOTECHNOLOGY

Combining Two-Stage Testing and Interval Mapping Strategies to Detect QTL for Resistance to Bonamiosis in the European Flat Oyster Ostrea edulis

(2009) D. Lallias et al.   MARINE BIOTECHNOLOGY

Paradigm shifts in marine fisheries genetics: ugly hypotheses slain by beautiful facts

(2008) Lorenz Hauser et al.   FISH AND FISHERIES

Coalescence Times and FST Under a Skewed Offspring Distribution Among Individuals in a Population

(2008) B. Eldon et al.   GENETICS

High-Density Linkage Maps and Sex-Linked Markers for the Black Tiger Shrimp ( Penaeus monodon )

(2008) Jan Staelens et al.   GENETICS

A coalescent process with simultaneous multiple mergers for approximating the gene genealogies of many marine organisms

(2008) Ori Sargsyan et al.   THEORETICAL POPULATION BIOLOGY

The Population Genetics of dN/dS

(2008) Sergey Kryazhimskiy et al.   PLoS Genetics