Genotyping by Sequencing and Genome–Environment Associations in Wild Common Bean Predict Widespread Divergent Adaptation to Drought

On how role versatility boosts an STI

(2018) Andrés J. Cortés   JOURNAL OF THEORETICAL BIOLOGY

Uneven recombination rate and linkage disequilibrium across a reference SNP map for common bean (Phaseolus vulgaris L.)

(2018) Matthew W. Blair et al.   PLoS One

Spatial and Temporal Scales of Range Expansion in Wild Phaseolus vulgaris

(2017) Andrea Ariani et al.   MOLECULAR BIOLOGY AND EVOLUTION

The snow and the willows: earlier spring snowmelt reduces performance in the low-lying alpine shrubSalix herbacea

(2016) Julia A. Wheeler et al.   JOURNAL OF ECOLOGY

Optimization of genotyping by sequencing (GBS) data in common bean (Phaseolus vulgaris L.)

(2016) Stephan Schröder et al.   MOLECULAR BREEDING

Genome-wide identification of SNPs and copy number variation in common bean (Phaseolus vulgaris L.) using genotyping-by-sequencing (GBS)

(2016) Andrea Ariani et al.   MOLECULAR BREEDING

Genome scan reveals selection acting on genes linked to stress response in wild pearl millet

(2016) Cécile Berthouly-Salazar et al.   MOLECULAR ECOLOGY

Determinants of genetic diversity

(2016) Hans Ellegren et al.   NATURE REVIEWS GENETICS

Making sense of genomic islands of differentiation in light of speciation

(2016) Jochen B. W. Wolf et al.   NATURE REVIEWS GENETICS

Genome-environment association study suggests local adaptation to climate at the regional scale in Fagus sylvatica

(2016) Andrea R. Pluess et al.   NEW PHYTOLOGIST

Identification of an ERECTA gene and its drought adaptation associations with wild and cultivated common bean

(2016) Matthew W. Blair et al.   PLANT SCIENCE

Convergent local adaptation to climate in distantly related conifers

(2016) S. Yeaman et al.   SCIENCE

Evolutionary potential in the Alpine: trait heritabilities and performance variation of the dwarf willowSalix herbaceafrom different elevations and microhabitats

(2016) Janosch Sedlacek et al.   Ecology and Evolution

With a little help from my friends: Community facilitation increases performance in the dwarf shrub Salix herbacea

(2015) J.A. Wheeler et al.   BASIC AND APPLIED ECOLOGY

Detecting spatial genetic signatures of local adaptation in heterogeneous landscapes

(2015) Brenna R. Forester et al.   MOLECULAR ECOLOGY

Small-scale drivers: the importance of nutrient availability and snowmelt timing on performance of the alpine shrub Salix herbacea

(2015) Chelsea J. Little et al.   OECOLOGIA

Genotyping-by-Sequencing Enabled Mapping and Marker Development for the Potyvirus Resistance Allele in Common Bean

(2015) John P. Hart et al.   Plant Genome

Genome-environment associations in sorghum landraces predict adaptive traits

(2015) J. R. Lasky et al.   Science Advances

Punctuated Distribution of Recombination Hotspots and Demarcation of Pericentromeric Regions in Phaseolus vulgaris L.

(2015) Mehul S. Bhakta et al.   PLoS One

The Response of the Alpine Dwarf Shrub Salix herbacea to Altered Snowmelt Timing: Lessons from a Multi-Site Transplant Experiment

(2015) Janosch Sedlacek et al.   PLoS One

What role do plant–soil interactions play in the habitat suitability and potential range expansion of the alpine dwarf shrub Salix herbacea?

(2014) Janosch F. Sedlacek et al.   BASIC AND APPLIED ECOLOGY

Genomic Signature of Adaptation to Climate inMedicago truncatula

(2014) Jeremy B. Yoder et al.   GENETICS

Small-scale patterns in snowmelt timing affect gene flow and the distribution of genetic diversity in the alpine dwarf shrub Salix herbacea

(2014) A J Cortés et al.   HEREDITY

A reference genome for common bean and genome-wide analysis of dual domestications

(2014) Jeremy Schmutz et al.   NATURE GENETICS

Increased spring freezing vulnerability for alpine shrubs under early snowmelt

(2014) J. A. Wheeler et al.   OECOLOGIA

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

Variation in MPK12 affects water use efficiency in Arabidopsis and reveals a pleiotropic link between guard cell size and ABA response

(2014) D. L. Des Marais et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic selection: genome-wide prediction in plant improvement

(2014) Zeratsion Abera Desta et al.   TRENDS IN PLANT SCIENCE

Threat to future global food security from climate change and ozone air pollution

(2014) Amos P. K. Tai et al.   Nature Climate Change

Genome-wide single nucleotide polymorphism and Insertion-Deletion discovery through next-generation sequencing of reduced representation libraries in common bean

(2013) Xiaolu Zou et al.   MOLECULAR BREEDING

Population genomic footprints of selection and associations with climate in natural populations ofArabidopsis hallerifrom the Alps

(2013) Martin C. Fischer et al.   MOLECULAR ECOLOGY

Ecological genomics of local adaptation

(2013) Outi Savolainen et al.   NATURE REVIEWS GENETICS

Drought Tolerance in Wild Plant Populations: The Case of Common Beans (Phaseolus vulgaris L.)

(2013) Andrés J. Cortés et al.   PLoS One

Páramo is the world's fastest evolving and coolest biodiversity hotspot

(2013) Santiago Madriñán et al.   Frontiers in Genetics

Gene-Based Single Nucleotide Polymorphism Markers for Genetic and Association Mapping in Common Bean

(2012) Carlos H Galeano et al.   BMC GENETICS

Molecular ecology and selection in the drought-related Asr gene polymorphisms in wild and cultivated common bean (Phaseolus vulgaris L.)

(2012) Andrés J Cortés et al.   BMC GENETICS

Characterizing genomic variation ofArabidopsis thaliana: the roles of geography and climate

(2012) JESSE R. LASKY et al.   MOLECULAR ECOLOGY

Diversification and Population Structure in Common Beans (Phaseolus vulgaris L.)

(2012) Matthew W. Blair et al.   PLoS One

Nucleotide diversity patterns at the drought-related DREB2 encoding genes in wild and cultivated common bean (Phaseolus vulgaris L.)

(2012) Andrés J. Cortés et al.   THEORETICAL AND APPLIED GENETICS

A high-throughput SNP marker system for parental polymorphism screening, and diversity analysis in common bean (Phaseolus vulgaris L.)

(2012) Matthew W. Blair et al.   THEORETICAL AND APPLIED GENETICS

SNP discovery, gene diversity, and linkage disequilibrium in wild populations of Populus tremuloides

(2012) Colin T. Kelleher et al.   Tree Genetics & Genomes

Climate change and evolutionary adaptation

(2011) Ary A. Hoffmann et al.   NATURE

What can patterns of differentiation across plant genomes tell us about adaptation and speciation?

(2011) J. L. Strasburg et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Adaptation to Climate Across the Arabidopsis thaliana Genome

(2011) A. M. Hancock et al.   SCIENCE

SNP marker diversity in common bean (Phaseolus vulgaris L.)

(2011) Andrés J. Cortés et al.   THEORETICAL AND APPLIED GENETICS

The Neutral Theory of Molecular Evolution in the Genomic Era

(2010) Masatoshi Nei et al.   Annual Review of Genomics and Human Genetics

The Genetics of Human Adaptation: Hard Sweeps, Soft Sweeps, and Polygenic Adaptation

(2010) Jonathan K. Pritchard et al.   CURRENT BIOLOGY

Population resequencing reveals local adaptation of Arabidopsis lyrata to serpentine soils

(2010) Thomas L Turner et al.   NATURE GENETICS

Mixed linear model approach adapted for genome-wide association studies

(2010) Zhiwu Zhang et al.   NATURE GENETICS

Genome-wide association studies in diverse populations

(2010) Noah A. Rosenberg et al.   NATURE REVIEWS GENETICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Linkage disequilibrium and population structure in wild and domesticated populations ofPhaseolus vulgarisL.

(2009) Monica Rossi et al.   Evolutionary Applications

Gene mapping in the wild with SNPs: guidelines and future directions

(2008) Jon Slate et al.   GENETICA

Personal genomes: The case of the missing heritability

(2008) Brendan Maher   NATURE

Linkage disequilibrium — understanding the evolutionary past and mapping the medical future

(2008) Montgomery Slatkin   NATURE REVIEWS GENETICS

Adaptation from standing genetic variation

(2007) R BARRETT et al.   TRENDS IN ECOLOGY & EVOLUTION