Gene-Based Single Nucleotide Polymorphism Markers for Genetic and Association Mapping in Common Bean

Genome-wide association mapping including phenotypes from relatives without genotypes

(2012) H. WANG et al.   Genetics Research

Unraveling the Complex Trait of Harvest Index with Association Mapping in Rice (Oryza sativa L.)

(2012) Xiaobai Li et al.   PLoS One

B2G-FAR, a species-centered GO annotation repository

(2011) Stefan Götz et al.   BIOINFORMATICS

Genic SNP markers and legume synteny reveal candidate genes underlying QTL for Macrophomina phaseolina resistance and maturity in cowpea [Vigna unguiculata (L) Walp.]

(2011) Wellington Muchero et al.   BMC GENOMICS

Association mapping of common bacterial blight resistance QTL in Ontario bean breeding populations

(2011) Chun Shi et al.   BMC PLANT BIOLOGY

Genome-wide analysis of auxin response factor (ARF) gene family from tomato and analysis of their role in flower and fruit development

(2011) Rahul Kumar et al.   MOLECULAR GENETICS AND GENOMICS

PHYTOCHROME-INTERACTING FACTOR 4 and 5 (PIF4 and PIF5) Activate the Homeobox ATHB2 and Auxin-Inducible IAA29 Genes in the Coincidence Mechanism Underlying Photoperiodic Control of Plant Growth of Arabidopsis thaliana

(2011) Atsushi Kunihiro et al.   PLANT AND CELL PHYSIOLOGY

Comparative SNP and Haplotype Analysis Reveals a Higher Genetic Diversity and Rapider LD Decay in Tropical than Temperate Germplasm in Maize

(2011) Yanli Lu et al.   PLoS One

Saturation of an Intra-Gene Pool Linkage Map: Towards a Unified Consensus Linkage Map for Fine Mapping and Synteny Analysis in Common Bean

(2011) Carlos H. Galeano et al.   PLoS One

Population Structure and Genetic Diversity in a Rice Core Collection (Oryza sativa L.) Investigated with SSR Markers

(2011) Peng Zhang et al.   PLoS One

Species Discrimination, Population Structure and Linkage Disequilibrium in Eucalyptus camaldulensis and Eucalyptus tereticornis Using SSR Markers

(2011) Shanmugapriya Arumugasundaram et al.   PLoS One

SNP marker diversity in common bean (Phaseolus vulgaris L.)

(2011) Andrés J. Cortés et al.   THEORETICAL AND APPLIED GENETICS

Association mapping and gene–gene interaction for stem rust resistance in CIMMYT spring wheat germplasm

(2011) Long-Xi Yu et al.   THEORETICAL AND APPLIED GENETICS

Population structure and marker–trait association analysis of the US peanut (Arachis hypogaea L.) mini-core collection

(2011) Ming Li Wang et al.   THEORETICAL AND APPLIED GENETICS

Genome-wide association mapping of agronomic and morphologic traits in highly structured populations of barley cultivars

(2011) Minghui Wang et al.   THEORETICAL AND APPLIED GENETICS

High-throughput SNP discovery and assay development in common bean

(2010) David L Hyten et al.   BMC GENOMICS

Single nucleotide polymorphisms for assessing genetic diversity in castor bean (Ricinus communis)

(2010) Jeffrey T Foster et al.   BMC PLANT BIOLOGY

Association genetics in crop improvement

(2010) J Antoni Rafalski   CURRENT OPINION IN PLANT BIOLOGY

A general method for controlling the genome-wide type I error rate in linkage and association mapping experiments in plants

(2010) B U Müller et al.   HEREDITY

Development of a Mesoamerican intra-genepool genetic map for quantitative trait loci detection in a drought tolerant × susceptible common bean (Phaseolus vulgaris L.) cross

(2010) Matthew W. Blair et al.   MOLECULAR BREEDING

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

(2010) Susanna Atwell et al.   NATURE

Genome-wide association studies of 14 agronomic traits in rice landraces

(2010) Xuehui Huang et al.   NATURE GENETICS

How Many Peas in a Pod? Legume Genes Responsible for Mutualistic Symbioses Underground

(2010) H. Kouchi et al.   PLANT AND CELL PHYSIOLOGY

Population genomic analysis of Tunisian Medicago truncatula reveals candidates for local adaptation

(2010) Maren L. Friesen et al.   PLANT JOURNAL

Cross-genome map based dissection of a nitrogen use efficiency ortho-metaQTL in bread wheat unravels concerted cereal genome evolution

(2010) Umar Masood Quraishi et al.   PLANT JOURNAL

Joint linkage-linkage disequilibrium mapping is a powerful approach to detecting quantitative trait loci underlying drought tolerance in maize

(2010) Y. Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

QTL for seed iron and zinc concentration and content in a Mesoamerican common bean (Phaseolus vulgaris L.) population

(2010) Matthew W. Blair et al.   THEORETICAL AND APPLIED GENETICS

Multiplex single nucleotide polymorphism (SNP) assay for detection of soybean mosaic virus resistance genes in soybean

(2010) Ainong Shi et al.   THEORETICAL AND APPLIED GENETICS

Syntenic relationships among legumes revealed using a gene-based genetic linkage map of common bean (Phaseolus vulgaris L.)

(2010) Melody McConnell et al.   THEORETICAL AND APPLIED GENETICS

Mapping of QTLs for morpho-agronomic and seed quality traits in a RIL population of common bean (Phaseolus vulgaris L.)

(2010) Elena Pérez-Vega et al.   THEORETICAL AND APPLIED GENETICS

Comparison of mixed-model approaches for association mapping in rapeseed, potato, sugar beet, maize, and Arabidopsis

(2009) Benjamin Stich et al.   BMC GENOMICS

Single strand conformation polymorphism based SNP and Indel markers for genetic mapping and synteny analysis of common bean (Phaseolus vulgaris L.)

(2009) Carlos H Galeano et al.   BMC GENOMICS

A Genomewide Comparison of Population Structure at STRPs and Nearby SNPs in Humans

(2009) B. A. Payseur et al.   MOLECULAR BIOLOGY AND EVOLUTION

Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploid plant species using 454 sequencing

(2009) Peter C. Bundock et al.   PLANT BIOTECHNOLOGY JOURNAL

Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection

(2009) M. Libault et al.   PLANT PHYSIOLOGY

Comparison of Mixed-Model Approaches for Association Mapping

(2008) B. Stich et al.   GENETICS

Linkage disequilibrium — understanding the evolutionary past and mapping the medical future

(2008) Montgomery Slatkin   NATURE REVIEWS GENETICS

Yield assessment of integument-led seed growth following targeted repair ofauxin response factor 2

(2008) Rhiannon Hughes et al.   PLANT BIOTECHNOLOGY JOURNAL