A reference genome for common bean and genome-wide analysis of dual domestications

Cytokinin Signaling Networks

(2012) Ildoo Hwang et al.   Annual Review of Plant Biology

GAPIT: genome association and prediction integrated tool

(2012) Alexander E. Lipka et al.   BIOINFORMATICS

VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing

(2012) D. C. Koboldt et al.   GENOME RESEARCH

Demographic factors shaped diversity in the two gene pools of wild common bean Phaseolus vulgaris L.

(2012) S Mamidi et al.   HEREDITY

A map of rice genome variation reveals the origin of cultivated rice

(2012) Xuehui Huang et al.   NATURE

Molecular analysis of the parallel domestication of the common bean (Phaseolus vulgaris) in Mesoamerica and the Andes

(2012) Elena Bitocchi et al.   NEW PHYTOLOGIST

Seed size: a priority trait in cereal crops

(2012) Markkandan Kesavan et al.   PHYSIOLOGIA PLANTARUM

A comparative study of seed yield parameters in Arabidopsis thaliana mutants and transgenics

(2012) Inge Van Daele et al.   PLANT BIOTECHNOLOGY JOURNAL

Mesoamerican origin of the common bean (Phaseolus vulgaris L.) is revealed by sequence data

(2012) E. Bitocchi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The common bean growth habit gene PvTFL1y is a functional homolog of Arabidopsis TFL1

(2012) S. L. Repinski et al.   THEORETICAL AND APPLIED GENETICS

Investigation of the domestication of common bean (Phaseolus vulgaris) using multilocus sequence data

(2011) Sujan Mamidi et al.   FUNCTIONAL PLANT BIOLOGY

Population structure and genetic differentiation among the USDA common bean (Phaseolus vulgaris L.) core collection

(2011) Phillip E. McClean et al.   GENETIC RESOURCES AND CROP EVOLUTION

Synteny mapping between common bean and soybean reveals extensive blocks of shared loci

(2010) Phillip E McClean et al.   BMC GENOMICS

High-throughput SNP discovery and assay development in common bean

(2010) David L Hyten et al.   BMC GENOMICS

SnapShot: Control of Flowering in Arabidopsis

(2010) Fabio Fornara et al.   CELL

Origin of agriculture and plant domestication in West Mesoamerica

(2010) Daniel Zizumbo-Villarreal et al.   GENETIC RESOURCES AND CROP EVOLUTION

Whole-genome resequencing reveals loci under selection during chicken domestication

(2010) Carl-Johan Rubin et al.   NATURE

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

Specific resistances against Pseudomonas syringae effectors AvrB and AvrRpm1 have evolved differently in common bean (Phaseolus vulgaris), soybean (Glycine max), and Arabidopsis thaliana

(2010) Nicolas W. G. Chen et al.   NEW PHYTOLOGIST

Arabidopsis CULLIN4-Damaged DNA Binding Protein 1 Interacts with CONSTITUTIVELY PHOTOMORPHOGENIC1-SUPPRESSOR OF PHYA Complexes to Regulate Photomorphogenesis and Flowering Time

(2010) H. Chen et al.   PLANT CELL

Mapping of QTLs for morpho-agronomic and seed quality traits in a RIL population of common bean (Phaseolus vulgaris L.)

(2010) Elena Pérez-Vega et al.   THEORETICAL AND APPLIED GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Linkage disequilibrium and population structure in wild and domesticated populations ofPhaseolus vulgarisL.

(2009) Monica Rossi et al.   Evolutionary Applications

Protein markers and seed size variation in common bean segregating populations

(2009) Ana María González et al.   MOLECULAR BREEDING

The Sorghum bicolor genome and the diversification of grasses

(2009) Andrew H. Paterson et al.   NATURE

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Molecular and Chromosomal Evidence for Allopolyploidy in Soybean

(2009) N. Gill et al.   PLANT PHYSIOLOGY

A Nomadic Subtelomeric Disease Resistance Gene Cluster in Common Bean

(2009) P. David et al.   PLANT PHYSIOLOGY

Complete Resequencing of 40 Genomes Reveals Domestication Events and Genes in Silkworm (Bombyx)

(2009) Q. Xia et al.   SCIENCE

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

(2009) Ryan N. Gutenkunst et al.   PLoS Genetics

Molecular Analysis of a Large Subtelomeric Nucleotide-Binding-Site-Leucine-Rich-Repeat Family in Two Representative Genotypes of the Major Gene Pools of Phaseolus vulgaris

(2008) V. Geffroy et al.   GENETICS

Efficient Control of Population Structure in Model Organism Association Mapping

(2008) H. M. Kang et al.   GENETICS

Differential Accumulation of Retroelements and Diversification of NB-LRR Disease Resistance Genes in Duplicated Regions following Polyploidy in the Ancestor of Soybean

(2008) R. W. Innes et al.   PLANT PHYSIOLOGY