Reconstructing metabolic pathways of hydrocarbon-degrading bacteria from the Deepwater Horizon oil spill

Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling

(2015) Cindy J. Castelle et al.   CURRENT BIOLOGY

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Diverse, rare microbial taxa responded to the Deepwater Horizon deep-sea hydrocarbon plume

(2015) Sara Kleindienst et al.   ISME Journal

Contribution of cyanobacterial alkane production to the ocean hydrocarbon cycle

(2015) David J. Lea-Smith et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chemical dispersants can suppress the activity of natural oil-degrading microorganisms

(2015) Sara Kleindienst et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Type VI Secretion System Toxins Horizontally Shared between Marine Bacteria

(2015) Dor Salomon et al.   PLoS Pathogens

Anvi’o: an advanced analysis and visualization platform for ‘omics data

(2015) A. Murat Eren et al.   PeerJ

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

The rise and fall of methanotrophy following a deepwater oil-well blowout

(2014) M. Crespo-Medina et al.   Nature Geoscience

Microbial transformation of the Deepwater Horizon oil spill—past, present, and future perspectives

(2014) Nikole E. Kimes et al.   Frontiers in Microbiology

PhyloSift: phylogenetic analysis of genomes and metagenomes

(2014) Aaron E. Darling et al.   PeerJ

Hydrocarbon-degrading bacteria enriched by the Deepwater Horizon oil spill identified by cultivation and DNA-SIP

(2013) Tony Gutierrez et al.   ISME Journal

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Deep-sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill

(2012) Jacob Baelum et al.   ENVIRONMENTAL MICROBIOLOGY

Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill

(2012) Olivia U Mason et al.   ISME Journal

Genome-enabled transcriptomics reveals archaeal populations that drive nitrification in a deep-sea hydrothermal plume

(2012) Brett J Baker et al.   ISME Journal

RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data

(2011) Y. Zhao et al.   BIOINFORMATICS

Rapid microbial respiration of oil from theDeepwater Horizonspill in offshore surface waters of the Gulf of Mexico

(2011) Bethanie R Edwards et al.   Environmental Research Letters

Fate of Dispersants Associated with the Deepwater Horizon Oil Spill

(2011) Elizabeth B. Kujawinski et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Natural gas and temperature structured a microbial community response to the Deepwater Horizon oil spill

(2011) M. C. Redmond et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data

(2011) Christopher S Miller et al.   GENOME BIOLOGY

Alcanivorax pacificus sp. nov., isolated from a deep-sea pyrene-degrading consortium

(2010) Q. Lai et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Deep-Sea Oil Plume Enriches Indigenous Oil-Degrading Bacteria

(2010) Terry C. Hazen et al.   SCIENCE

Magnitude of the 2010 Gulf of Mexico Oil Leak

(2010) Timothy J. Crone et al.   SCIENCE

Propane Respiration Jump-Starts Microbial Response to a Deep Oil Spill

(2010) David L. Valentine et al.   SCIENCE

Proteomic analysis of Marinobacter hydrocarbonoclasticus SP17 biofilm formation at the alkane-water interface reveals novel proteins and cellular processes involved in hexadecane assimilation

(2009) Pierre-Joseph Vaysse et al.   RESEARCH IN MICROBIOLOGY

Community-wide analysis of microbial genome sequence signatures

(2009) Gregory J Dick et al.   GENOME BIOLOGY

A pyrene-degrading consortium from deep-sea sediment of the West Pacific and its key memberCycloclasticussp. P1

(2008) Baojiang Wang et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial metabolism of polycyclic aromatic hydrocarbons: strategies for bioremediation

(2008) Archana Chauhan et al.   INDIAN JOURNAL OF MICROBIOLOGY

Thalassospira tepidiphila sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium isolated from seawater

(2008) Y. Kodama et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY