Microbial community successional patterns in beach sands impacted by the Deepwater Horizon oil spill

Microbial Responses to the Deepwater Horizon Oil Spill: From Coastal Wetlands to the Deep Sea

(2015) G.M. King et al.   Annual Review of Marine Science

Microbial Dynamics Following the Macondo Oil Well Blowout across Gulf of Mexico Environments

(2014) Samantha B. Joye et al.   BIOSCIENCE

Estimating coverage in metagenomic data sets and why it matters

(2014) Luis M Rodriguez-R et al.   ISME Journal

MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences

(2014) Chengwei Luo et al.   NUCLEIC ACIDS RESEARCH

Strengths and Limitations of 16S rRNA Gene Amplicon Sequencing in Revealing Temporal Microbial Community Dynamics

(2014) Rachel Poretsky et al.   PLoS One

The metabolic pathways and environmental controls of hydrocarbon biodegradation in marine ecosystems

(2014) Joel E. Kostka et al.   Frontiers in Microbiology

Benthic Exchange and Biogeochemical Cycling in Permeable Sediments

(2013) Markus Huettel et al.   Annual Review of Marine Science

Nonpareil: a redundancy-based approach to assess the level of coverage in metagenomic datasets

(2013) Luis M. Rodriguez-R et al.   BIOINFORMATICS

Distribution of Surficial and Buried Oil Contaminants across Sandy Beaches along NW Florida and Alabama Coasts Following the Deepwater Horizon Oil Spill in 2010

(2013) Ping Wang et al.   JOURNAL OF COASTAL RESEARCH

Extent and Degree of Shoreline Oiling: Deepwater Horizon Oil Spill, Gulf of Mexico, USA

(2013) Jacqueline Michel et al.   PLoS One

Shifts in the Microbial Community Composition of Gulf Coast Beaches Following Beach Oiling

(2013) Ryan J. Newton et al.   PLoS One

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Dramatic Shifts in Benthic Microbial Eukaryote Communities following the Deepwater Horizon Oil Spill

(2012) Holly M. Bik et al.   PLoS One

Dispersants as Used in Response to the MC252-Spill Lead to Higher Mobility of Polycyclic Aromatic Hydrocarbons in Oil-Contaminated Gulf of Mexico Sand

(2012) Alissa Zuijdgeest et al.   PLoS One

Dynamic autoinoculation and the microbial ecology of a deep water hydrocarbon irruption

(2012) D. L. Valentine et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fundamentals of Microbial Community Resistance and Resilience

(2012) Ashley Shade et al.   Frontiers in Microbiology

Evolutionary Game Theory as a Framework for Studying Biological Invasions

(2011) Lauren M. Pintor et al.   AMERICAN NATURALIST

Metaxa: a software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing datasets

(2011) Johan Bengtsson et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Hydrocarbon-Degrading Bacteria and the Bacterial Community Response in Gulf of Mexico Beach Sands Impacted by the Deepwater Horizon Oil Spill

(2011) Joel E. Kostka et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Oil Biodegradation and Bioremediation: A Tale of the Two Worst Spills in U.S. History

(2011) Ronald M. Atlas et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage

(2011) Chris L Dupont et al.   ISME Journal

Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume

(2011) Zhenmei Lu et al.   ISME Journal

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Performance, Accuracy, and Web Server for Evolutionary Placement of Short Sequence Reads under Maximum Likelihood

(2011) Simon A. Berger et al.   SYSTEMATIC BIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

(2010) Frederick A Matsen et al.   BMC BIOINFORMATICS

Gene diversity of CYP153A and AlkB alkane hydroxylases in oil-degrading bacteria isolated from the Atlantic Ocean

(2010) Liping Wang et al.   ENVIRONMENTAL MICROBIOLOGY

Parvibaculum indicum sp. nov., isolated from deep-sea water

(2010) Q. Lai et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

FragGeneScan: predicting genes in short and error-prone reads

(2010) Mina Rho et al.   NUCLEIC ACIDS RESEARCH

Deep-Sea Oil Plume Enriches Indigenous Oil-Degrading Bacteria

(2010) Terry C. Hazen et al.   SCIENCE

The Systemic Imprint of Growth and Its Uses in Ecological (Meta)Genomics

(2010) Sara Vieira-Silva et al.   PLoS Genetics

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Novel marine carbazole-degrading bacteria

(2009) Rintaro Maeda et al.   FEMS MICROBIOLOGY LETTERS

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA