Metagenomic applications in environmental monitoring and bioremediation

Marine Oil Biodegradation

(2016) Terry C. Hazen et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

In situ mobility of uranium in the presence of nitrate following sulfate-reducing conditions

(2016) Charles J. Paradis et al.   JOURNAL OF CONTAMINANT HYDROLOGY

Microbial Responses to the Deepwater Horizon Oil Spill: From Coastal Wetlands to the Deep Sea

(2015) G.M. King et al.   Annual Review of Marine Science

Dynamic Succession of Groundwater Functional Microbial Communities in Response to Emulsified Vegetable Oil Amendment during SustainedIn SituU(VI) Reduction

(2015) Ping Zhang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metagenomics meets time series analysis: unraveling microbial community dynamics

(2015) Karoline Faust et al.   CURRENT OPINION IN MICROBIOLOGY

Microbial metaproteomics for characterizing the range of metabolic functions and activities of human gut microbiota

(2015) Weili Xiong et al.   PROTEOMICS

A unified initiative to harness Earth's microbiomes

(2015) A. P. Alivisatos et al.   SCIENCE

Natural Bacterial Communities Serve as Quantitative Geochemical Biosensors

(2015) Mark B. Smith et al.   mBio

Comparative metagenomics reveals impact of contaminants on groundwater microbiomes

(2015) Christopher L. Hemme et al.   Frontiers in Microbiology

Disturbance and temporal partitioning of the activated sludge metacommunity

(2014) David C Vuono et al.   ISME Journal

Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill

(2014) Olivia U Mason et al.   ISME Journal

Metallomics of two microorganisms relevant to heavy metal bioremediation reveal fundamental differences in metal assimilation and utilization

(2014) W. Andrew Lancaster et al.   Metallomics

GroopM: an automated tool for the recovery of population genomes from related metagenomes

(2014) Michael Imelfort et al.   PeerJ

Metaproteomics: Harnessing the Power of High Performance Mass Spectrometry to Identify the Suite of Proteins That Control Metabolic Activities in Microbial Communities

(2013) Robert L. Hettich et al.   ANALYTICAL CHEMISTRY

The biogeochemistry and bioremediation of uranium and other priority radionuclides

(2013) Laura Newsome et al.   CHEMICAL GEOLOGY

Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities

(2013) Migun Shakya et al.   ENVIRONMENTAL MICROBIOLOGY

StressChip as a High-Throughput Tool for Assessing Microbial Community Responses to Environmental Stresses

(2013) Aifen Zhou et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Succession of Hydrocarbon-Degrading Bacteria in the Aftermath of the Deepwater Horizon Oil Spill in the Gulf of Mexico

(2013) Eric A. Dubinsky et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Hydrocarbon-degrading bacteria enriched by the Deepwater Horizon oil spill identified by cultivation and DNA-SIP

(2013) Tony Gutierrez et al.   ISME Journal

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

Genomes from Metagenomics

(2013) I. Sharon et al.   SCIENCE

Molecular Analysis of theIn SituGrowth Rates of Subsurface Geobacter Species

(2012) Dawn E. Holmes et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial Functional Gene Diversity with a Shift of Subsurface Redox Conditions duringIn SituUranium Reduction

(2012) Yuting Liang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Systems biology approach to bioremediation

(2012) Romy Chakraborty et al.   CURRENT OPINION IN BIOTECHNOLOGY

Advances in monitoring environmental microbes

(2012) Terry C Hazen et al.   CURRENT OPINION IN BIOTECHNOLOGY

High-density PhyloChip profiling of stimulated aquifer microbial communities reveals a complex response to acetate amendment

(2012) Kim M. Handley et al.   FEMS MICROBIOLOGY ECOLOGY

Ecosystem processes and interactions in a morass of diversity

(2012) James I. Prosser   FEMS MICROBIOLOGY ECOLOGY

Sizing up metatranscriptomics

(2012) Mary Ann Moran et al.   ISME Journal

Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill

(2012) Olivia U Mason et al.   ISME Journal

Describing microbial communities and performing global comparisons in the ‘omic era

(2012) Tom O Delmont et al.   ISME Journal

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

A Limited Microbial Consortium Is Responsible for Extended Bioreduction of Uranium in a Contaminated Aquifer

(2011) Thomas M. Gihring et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Denitrifying Bacteria from the Genus Rhodanobacter Dominate Bacterial Communities in the Highly Contaminated Subsurface of a Nuclear Legacy Waste Site

(2011) Stefan J. Green et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Beyond the Venn diagram: the hunt for a core microbiome

(2011) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Phase Preference by Active, Acetate-Utilizing Bacteria at the Rifle, CO Integrated Field Research Challenge Site

(2011) Lee J. Kerkhof et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Enhanced Reductive Dechlorination of Polychlorinated Biphenyl Impacted Sediment by Bioaugmentation with a Dehalorespiring Bacterium

(2011) Rayford B. Payne et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Oil Biodegradation and Bioremediation: A Tale of the Two Worst Spills in U.S. History

(2011) Ronald M. Atlas et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Evidence for multiple modes of uranium immobilization by an anaerobic bacterium

(2011) Allison E. Ray et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Acetate Availability and its Influence on Sustainable Bioremediation of Uranium-Contaminated Groundwater

(2011) Kenneth H. Williams et al.   GEOMICROBIOLOGY JOURNAL

16S rRNA Gene Microarray Analysis of Microbial Communities in Ethanol-Stimulated Subsurface Sediment

(2011) Santosh R. Mohanty et al.   MICROBES AND ENVIRONMENTS

Composition and fate of gas and oil released to the water column during the Deepwater Horizon oil spill

(2011) C. M. Reddy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Natural gas and temperature structured a microbial community response to the Deepwater Horizon oil spill

(2011) M. C. Redmond et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Significant Association between Sulfate-Reducing Bacteria and Uranium-Reducing Microbial Communities as Revealed by a Combined Massively Parallel Sequencing-Indicator Species Approach

(2010) E. Cardenas et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Monitoring Microbial Community Structure and Dynamics duringin situU(VI) Bioremediation with a Field-Portable Microarray Analysis System

(2010) Darrell P. Chandler et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Analysis of Biostimulated Microbial Communities from Two Field Experiments Reveals Temporal and Spatial Differences in Proteome Profiles

(2010) Stephen J. Callister et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Postbiostimulation microbial community structure changes that control the reoxidation of uranium

(2010) Adeola Lucie N'Guessan et al.   FEMS MICROBIOLOGY ECOLOGY

Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community

(2010) Christopher L Hemme et al.   ISME Journal

Tracking Hydrocarbon Plume Transport and Biodegradation at Deepwater Horizon

(2010) Richard Camilli et al.   SCIENCE

Deep-Sea Oil Plume Enriches Indigenous Oil-Degrading Bacteria

(2010) Terry C. Hazen et al.   SCIENCE

Magnitude of the 2010 Gulf of Mexico Oil Leak

(2010) Timothy J. Crone et al.   SCIENCE

Proteogenomic Monitoring of Geobacter Physiology during Stimulated Uranium Bioremediation

(2009) M. J. Wilkins et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Functional Gene Array-Based Analysis of Microbial Community Structure in Groundwaters with a Gradient of Contaminant Levels

(2009) Patricia J. Waldron et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Nitrate removal using Brevundimonas diminuta MTCC 8486 from ground water

(2009) S. Kavitha et al.   WATER SCIENCE AND TECHNOLOGY

Microbial Communities in Contaminated Sediments, Associated with Bioremediation of Uranium to Submicromolar Levels

(2008) E. Cardenas et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY