The Transporter Classification Database (TCDB): recent advances

The complexity, challenges and benefits of comparing two transporter classification systems in TCDB and Pfam

(2015) Zachary Chiang et al.   BRIEFINGS IN BIOINFORMATICS

The LysE Superfamily of Transport Proteins Involved in Cell Physiology and Pathogenesis

(2015) Brian V. Tsu et al.   PLoS One

Peptide ligand recognition by G protein-coupled receptors

(2015) Brian E. Krumm et al.   Frontiers in Pharmacology

Bacterial Multidrug Efflux Transporters

(2014) Jared A. Delmar et al.   Annual Review of Biophysics

Diversity in ABC transporters: Type I, II and III importers

(2014) Austin J. Rice et al.   CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY

Genetic Variations and Diseases in UniProtKB/Swiss-Prot: The Ins and Outs of Expert Manual Curation

(2014) Maria Livia Famiglietti et al.   HUMAN MUTATION

Major Facilitator Superfamily Porters, LacY, FucP and XylE of Escherichia coli Appear to Have Evolved Positionally Dissimilar Catalytic Residues without Rearrangement of 3-TMS Repeat Units

(2014) Åke Västermark et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

Establishing homology between mitochondrial calcium uniporters, prokaryotic magnesium channels and chlamydial IncA proteins

(2014) A. Lee et al.   MICROBIOLOGY-SGM

Gene Ontology Consortium: going forward

(2014)   NUCLEIC ACIDS RESEARCH

The RCSB Protein Data Bank: views of structural biology for basic and applied research and education

(2014) Peter W. Rose et al.   NUCLEIC ACIDS RESEARCH

The InterPro protein families database: the classification resource after 15 years

(2014) Alex Mitchell et al.   NUCLEIC ACIDS RESEARCH

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

Expansion of the APC superfamily of secondary carriers

(2014) Ake Vastermark et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Topological and phylogenetic analyses of bacterial holin families and superfamilies

(2013) Bhaskara L. Reddy et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Evolutionary relationships of ATP-Binding Cassette (ABC) uptake porters

(2013) Wei Hao Zheng et al.   BMC MICROBIOLOGY

The transporter-opsin-G protein-coupled receptor (TOG) superfamily

(2013) Daniel C. Yee et al.   FEBS Journal

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Transporter Classification Database

(2013) Milton H. Saier et al.   NUCLEIC ACIDS RESEARCH

DrugBank 4.0: shedding new light on drug metabolism

(2013) Vivian Law et al.   NUCLEIC ACIDS RESEARCH

eggNOG v4.0: nested orthology inference across 3686 organisms

(2013) Sean Powell et al.   NUCLEIC ACIDS RESEARCH

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

(2013) Ron Caspi et al.   NUCLEIC ACIDS RESEARCH

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

BioV Suite - a collection of programs for the study of transport protein evolution

(2012) Vamsee S. Reddy et al.   FEBS Journal

The major facilitator superfamily (MFS) revisited

(2012) Vamsee S. Reddy et al.   FEBS Journal

Phylogenetic Characterization of Transport Protein Superfamilies: Superiority of SuperfamilyTree Programs over Those Based on Multiple Alignments

(2012) Jonathan S. Chen et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

EcoGene 3.0

(2012) Jindan Zhou et al.   NUCLEIC ACIDS RESEARCH

Bioinformatic Analyses of Bacterial Mercury Ion (Hg2+) Transporters

(2012) Timothy Mok et al.   WATER AIR AND SOIL POLLUTION

Evolution of the Oligopeptide Transporter Family

(2011) Kenny M. Gomolplitinant et al.   JOURNAL OF MEMBRANE BIOLOGY

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Crystal structure of a phosphorylation-coupled saccharide transporter

(2011) Yu Cao et al.   NATURE

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

(2011) K. D. Pruitt et al.   NUCLEIC ACIDS RESEARCH

Mechanisms of Oxidative Protein Folding in the Bacterial Cell Envelope

(2010) Hiroshi Kadokura et al.   ANTIOXIDANTS & REDOX SIGNALING

The P-Type ATPase Superfamily

(2010) Henry Chan et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

Entrez Gene: gene-centered information at NCBI

(2010) D. Maglott et al.   NUCLEIC ACIDS RESEARCH

Chloride Channels: Often Enigmatic, Rarely Predictable

(2009) Charity Duran et al.   Annual Review of Physiology

Membrane Porters of ATP-Binding Cassette Transport Systems Are Polyphyletic

(2009) Bin Wang et al.   JOURNAL OF MEMBRANE BIOLOGY

Bioinformatic Analyses of Transmembrane Transport: Novel Software for Deducing Protein Phylogeny, Topology, and Evolution

(2009) Ming Ren Yen et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

De novo identification of highly diverged protein repeats by probabilistic consistency

(2008) A. Biegert et al.   BIOINFORMATICS

The Transporter Classification Database: recent advances

(2008) M. H. Saier et al.   NUCLEIC ACIDS RESEARCH