- Home
- Publications
- Publication Search
- Publication Details
Title
A promoter interaction map for cardiovascular disease genetics
Authors
Keywords
-
Journal
eLife
Volume 7, Issue -, Pages -
Publisher
eLife Sciences Organisation, Ltd.
Online
2018-07-10
DOI
10.7554/elife.35788
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Dual functionality of cis -regulatory elements as developmental enhancers and Polycomb response elements
- (2017) Jelena Erceg et al. GENES & DEVELOPMENT
- Impact of regulatory variation across human iPSCs and differentiated cells
- (2017) Nicholas E. Banovich et al. GENOME RESEARCH
- Dynamic Rewiring of Promoter-Anchored Chromatin Loops during Adipocyte Differentiation
- (2017) Rasmus Siersbæk et al. MOLECULAR CELL
- Static and Dynamic DNA Loops form AP-1-Bound Activation Hubs during Macrophage Development
- (2017) Douglas H. Phanstiel et al. MOLECULAR CELL
- 3D structures of individual mammalian genomes studied by single-cell Hi-C
- (2017) Tim J. Stevens et al. NATURE
- Genome-wide characterization of mammalian promoters with distal enhancer functions
- (2017) Lan T M Dao et al. NATURE GENETICS
- Lineage-specific dynamic and pre-established enhancer–promoter contacts cooperate in terminal differentiation
- (2017) Adam J Rubin et al. NATURE GENETICS
- Enhancer connectome in primary human cells identifies target genes of disease-associated DNA elements
- (2017) Maxwell R Mumbach et al. NATURE GENETICS
- A tiling-deletion-based genetic screen for cis-regulatory element identification in mammalian cells
- (2017) Yarui Diao et al. NATURE METHODS
- Salmon provides fast and bias-aware quantification of transcript expression
- (2017) Rob Patro et al. NATURE METHODS
- Global reorganisation of cis-regulatory units upon lineage commitment of human embryonic stem cells
- (2017) Paula Freire-Pritchett et al. eLife
- Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters
- (2016) Biola M. Javierre et al. CELL
- The 3D Genome as Moderator of Chromosomal Communication
- (2016) Job Dekker et al. CELL
- The Shh Topological Domain Facilitates the Action of Remote Enhancers by Reducing the Effects of Genomic Distances
- (2016) Orsolya Symmons et al. DEVELOPMENTAL CELL
- Formation of new chromatin domains determines pathogenicity of genomic duplications
- (2016) Martin Franke et al. NATURE
- Mouse Genome Database (MGD)-2017: community knowledge resource for the laboratory mouse
- (2016) Judith A. Blake et al. NUCLEIC ACIDS RESEARCH
- A Compendium of Chromatin Contact Maps Reveals Spatially Active Regions in the Human Genome
- (2016) Anthony D. Schmitt et al. Cell Reports
- A Novel Approach to High-Quality Postmortem Tissue Procurement: The GTEx Project
- (2015) Latarsha J. Carithers et al. BIOPRESERVATION AND BIOBANKING
- Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions
- (2015) Darío G. Lupiáñez et al. CELL
- Human Induced Pluripotent Stem Cell-Derived Cardiomyocytes: Insights Into Molecular, Cellular, and Functional Phenotypes
- (2015) I. Karakikes et al. CIRCULATION RESEARCH
- The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements
- (2015) Stefan Schoenfelder et al. GENOME RESEARCH
- Chromatin architecture reorganization during stem cell differentiation
- (2015) Jesse R. Dixon et al. NATURE
- Integrative analysis of 111 reference human epigenomes
- (2015) Anshul Kundaje et al. NATURE
- Epigenomic annotation of genetic variants using the Roadmap Epigenome Browser
- (2015) Xin Zhou et al. NATURE BIOTECHNOLOGY
- A comprehensive 1000 Genomes–based genome-wide association meta-analysis of coronary artery disease
- (2015) Majid Nikpay et al. NATURE GENETICS
- Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C
- (2015) Borbala Mifsud et al. NATURE GENETICS
- FTO Obesity Variant Circuitry and Adipocyte Browning in Humans
- (2015) Melina Claussnitzer et al. NEW ENGLAND JOURNAL OF MEDICINE
- The UCSC Genome Browser database: 2016 update
- (2015) Matthew L. Speir et al. NUCLEIC ACIDS RESEARCH
- Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
- (2015) Nuala A. O'Leary et al. NUCLEIC ACIDS RESEARCH
- TopDom: an efficient and deterministic method for identifying topological domains in genomes
- (2015) Hanjun Shin et al. NUCLEIC ACIDS RESEARCH
- A Novel Approach to High-Quality Postmortem Tissue Procurement: The GTEx Project
- (2015) Latarsha J. Carithers et al. Biopreservation and Biobanking
- A Discrete Transition Zone Organizes the Topological and Regulatory Autonomy of the Adjacent Tfap2c and Bmp7 Genes
- (2015) Taro Tsujimura et al. PLoS Genetics
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
- Enhancer loops appear stable during development and are associated with paused polymerase
- (2014) Yad Ghavi-Helm et al. NATURE
- Obesity-associated variants within FTO form long-range functional connections with IRX3
- (2014) Scott Smemo et al. NATURE
- Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization
- (2014) Dan E Arking et al. NATURE GENETICS
- Chemically defined generation of human cardiomyocytes
- (2014) Paul W Burridge et al. NATURE METHODS
- Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage Commitment
- (2013) Jennifer E. Phillips-Cremins et al. CELL
- A genome-wide association study identifies 6p21 as novel risk locus for dilated cardiomyopathy
- (2013) Benjamin Meder et al. EUROPEAN HEART JOURNAL
- Modification of Enhancer Chromatin: What, How, and Why?
- (2013) Eliezer Calo et al. MOLECULAR CELL
- A high-resolution map of the three-dimensional chromatin interactome in human cells
- (2013) Fulai Jin et al. NATURE
- Meis1 regulates postnatal cardiomyocyte cell cycle arrest
- (2013) Ahmed I. Mahmoud et al. NATURE
- Enhancers: five essential questions
- (2013) Len A. Pennacchio et al. NATURE REVIEWS GENETICS
- Controlling Long-Range Genomic Interactions at a Native Locus by Targeted Tethering of a Looping Factor
- (2012) Wulan Deng et al. CELL
- Dual transcriptional activator and repressor roles of TBX20 regulate adult cardiac structure and function
- (2012) Noboru J. Sakabe et al. HUMAN MOLECULAR GENETICS
- Regulatory variation in a TBX5 enhancer leads to isolated congenital heart disease
- (2012) Scott Smemo et al. HUMAN MOLECULAR GENETICS
- TBX5 drives Scn5a expression to regulate cardiac conduction system function
- (2012) David E. Arnolds et al. JOURNAL OF CLINICAL INVESTIGATION
- Topological domains in mammalian genomes identified by analysis of chromatin interactions
- (2012) Jesse R. Dixon et al. NATURE
- Spatial partitioning of the regulatory landscape of the X-inactivation centre
- (2012) Elphège P. Nora et al. NATURE
- Breast cancer risk–associated SNPs modulate the affinity of chromatin for FOXA1 and alter gene expression
- (2012) Richard Cowper-Sal·lari et al. NATURE GENETICS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Transcription factors: from enhancer binding to developmental control
- (2012) François Spitz et al. NATURE REVIEWS GENETICS
- Systematic Localization of Common Disease-Associated Variation in Regulatory DNA
- (2012) M. T. Maurano et al. SCIENCE
- Tabix: fast retrieval of sequence features from generic TAB-delimited files
- (2011) H. Li BIOINFORMATICS
- Cardiomyocytes derived from human embryonic and induced pluripotent stem cells: comparative ultrastructure
- (2011) Mihaela Gherghiceanu et al. JOURNAL OF CELLULAR AND MOLECULAR MEDICINE
- Tbx20 regulates a genetic program essential to adult mouse cardiomyocyte function
- (2011) Tao Shen et al. JOURNAL OF CLINICAL INVESTIGATION
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Association of Genome-Wide Variation With the Risk of Incident Heart Failure in Adults of European and African Ancestry
- (2010) Nicholas L. Smith et al. Circulation-Cardiovascular Genetics
- Upregulation of c-MYC in cis through a Large Chromatin Loop Linked to a Cancer Risk-Associated Single-Nucleotide Polymorphism in Colorectal Cancer Cells
- (2010) J. B. Wright et al. MOLECULAR AND CELLULAR BIOLOGY
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
- (2010) Sven Heinz et al. MOLECULAR CELL
- A unique chromatin signature uncovers early developmental enhancers in humans
- (2010) Alvaro Rada-Iglesias et al. NATURE
- From noncoding variant to phenotype via SORT1 at the 1p13 cholesterol locus
- (2010) Kiran Musunuru et al. NATURE
- Histone H3K27ac separates active from poised enhancers and predicts developmental state
- (2010) M. P. Creyghton et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Histone modification levels are predictive for gene expression
- (2010) R. Karlic et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Mutations in Smooth Muscle Alpha-Actin (ACTA2) Cause Coronary Artery Disease, Stroke, and Moyamoya Disease, Along with Thoracic Aortic Disease
- (2009) Dong-Chuan Guo et al. AMERICAN JOURNAL OF HUMAN GENETICS
- CTCF: Master Weaver of the Genome
- (2009) Jennifer E. Phillips et al. CELL
- Histone modifications at human enhancers reflect global cell-type-specific gene expression
- (2009) Nathaniel D. Heintzman et al. NATURE
- Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing
- (2009) Andreas Gnirke et al. NATURE BIOTECHNOLOGY
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
- Long-range chromosomal interactions and gene regulation
- (2008) Adriana Miele et al. Molecular BioSystems
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started