Global reorganisation of cis-regulatory units upon lineage commitment of human embryonic stem cells
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Title
Global reorganisation of cis-regulatory units upon lineage commitment of human embryonic stem cells
Authors
Keywords
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Journal
eLife
Volume 6, Issue -, Pages -
Publisher
eLife Sciences Organisation, Ltd.
Online
2017-03-23
DOI
10.7554/elife.21926
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Note: Only part of the references are listed.- Enhancer Control of Transcriptional Bursting
- (2016) Takashi Fukaya et al. CELL
- 3D Chromosome Regulatory Landscape of Human Pluripotent Cells
- (2016) Xiong Ji et al. Cell Stem Cell
- Shadow Enhancers Are Pervasive Features of Developmental Regulatory Networks
- (2016) Enrico Cannavò et al. CURRENT BIOLOGY
- Enhancer Regulation of Transcriptional Bursting Parameters Revealed by Forced Chromatin Looping
- (2016) Caroline R. Bartman et al. MOLECULAR CELL
- High-throughput mapping of regulatory DNA
- (2016) Nisha Rajagopal et al. NATURE BIOTECHNOLOGY
- Enhancer–promoter interactions are encoded by complex genomic signatures on looping chromatin
- (2016) Sean Whalen et al. NATURE GENETICS
- Histone H3 globular domain acetylation identifies a new class of enhancers
- (2016) Madapura M Pradeepa et al. NATURE GENETICS
- Genome-wide mapping and analysis of chromosome architecture
- (2016) Anthony D. Schmitt et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Identification of multi-loci hubs from 4C-seq demonstrates the functional importance of simultaneous interactions
- (2016) Tingting Jiang et al. NUCLEIC ACIDS RESEARCH
- Regulation of Genome Architecture and Function by Polycomb Proteins
- (2016) Marianne Entrevan et al. TRENDS IN CELL BIOLOGY
- “Hit-and-Run” leaves its mark: Catalyst transcription factors and chromatin modification
- (2015) Kranthi Varala et al. BIOESSAYS
- In the loop: promoter–enhancer interactions and bioinformatics
- (2015) Antonio Mora et al. BRIEFINGS IN BIOINFORMATICS
- Transcriptional enhancers: functional insights and role in human disease
- (2015) Irene Miguel-Escalada et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements
- (2015) Stefan Schoenfelder et al. GENOME RESEARCH
- Widespread Rearrangement of 3D Chromatin Organization Underlies Polycomb-Mediated Stress-Induced Silencing
- (2015) Li Li et al. MOLECULAR CELL
- Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation
- (2015) J. Fraser et al. Molecular Systems Biology
- Chromatin architecture reorganization during stem cell differentiation
- (2015) Jesse R. Dixon et al. NATURE
- Integrative analysis of 111 reference human epigenomes
- (2015) Anshul Kundaje et al. NATURE
- Polycomb repressive complex PRC1 spatially constrains the mouse embryonic stem cell genome
- (2015) Stefan Schoenfelder et al. NATURE GENETICS
- Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C
- (2015) Borbala Mifsud et al. NATURE GENETICS
- A predictive modeling approach for cell line-specific long-range regulatory interactions
- (2015) Sushmita Roy et al. NUCLEIC ACIDS RESEARCH
- Clustering of mammalianHoxgenes with other H3K27me3 targets within an active nuclear domain
- (2015) Maxence Vieux-Rochas et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Partially Redundant Enhancers Cooperatively Maintain Mammalian Pomc Expression Above a Critical Functional Threshold
- (2015) Daniel D. Lam et al. PLoS Genetics
- Enhancer additivity and non-additivity are determined by enhancer strength in the Drosophila embryo
- (2015) Jacques P Bothma et al. eLife
- Spurious transcription factor binding: Non-functional or genetically redundant?
- (2014) Mikhail Spivakov BIOESSAYS
- Genome-wide map of regulatory interactions in the human genome
- (2014) Nastaran Heidari et al. GENOME RESEARCH
- Enhancer loops appear stable during development and are associated with paused polymerase
- (2014) Yad Ghavi-Helm et al. NATURE
- Transcriptional enhancers: from properties to genome-wide predictions
- (2014) Daria Shlyueva et al. NATURE REVIEWS GENETICS
- Transcriptional and Epigenetic Dynamics during Specification of Human Embryonic Stem Cells
- (2013) Casey A. Gifford et al. CELL
- Interactome Maps of Mouse Gene Regulatory Domains Reveal Basic Principles of Transcriptional Regulation
- (2013) Kyong-Rim Kieffer-Kwon et al. CELL
- Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage Commitment
- (2013) Jennifer E. Phillips-Cremins et al. CELL
- Klf4 Organizes Long-Range Chromosomal Interactions with the Oct4 Locus in Reprogramming and Pluripotency
- (2013) Zong Wei et al. Cell Stem Cell
- Long-Range Chromatin Contacts in Embryonic Stem Cells Reveal a Role for Pluripotency Factors and Polycomb Proteins in Genome Organization
- (2013) Matthew Denholtz et al. Cell Stem Cell
- Genome-wide Chromatin Interactions of the Nanog Locus in Pluripotency, Differentiation, and Reprogramming
- (2013) Effie Apostolou et al. Cell Stem Cell
- Intrachromosomal Looping Is Required for Activation of Endogenous Pluripotency Genes during Reprogramming
- (2013) He Zhang et al. Cell Stem Cell
- An Integrated Holo-Enhancer Unit Defines Tissue and Gene Specificity of the Fgf8 Regulatory Landscape
- (2013) Mirna Marinić et al. DEVELOPMENTAL CELL
- Modification of Enhancer Chromatin: What, How, and Why?
- (2013) Eliezer Calo et al. MOLECULAR CELL
- Topology of mammalian developmental enhancers and their regulatory landscapes
- (2013) Wouter de Laat et al. NATURE
- A high-resolution map of the three-dimensional chromatin interactome in human cells
- (2013) Fulai Jin et al. NATURE
- Enhancers: five essential questions
- (2013) Len A. Pennacchio et al. NATURE REVIEWS GENETICS
- Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data
- (2013) Job Dekker et al. NATURE REVIEWS GENETICS
- Transcriptional regulation by Polycomb group proteins
- (2013) Luciano Di Croce et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- EMAGE mouse embryo spatial gene expression database: 2014 update
- (2013) Lorna Richardson et al. NUCLEIC ACIDS RESEARCH
- Genome-Wide Quantitative Enhancer Activity Maps Identified by STARR-seq
- (2013) C. D. Arnold et al. SCIENCE
- Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome
- (2012) Tom Sexton et al. CELL
- Enhancers: emerging roles in cell fate specification
- (2012) Chin-Tong Ong et al. EMBO REPORTS
- The long-range interaction landscape of gene promoters
- (2012) Amartya Sanyal et al. NATURE
- Topological domains in mammalian genomes identified by analysis of chromatin interactions
- (2012) Jesse R. Dixon et al. NATURE
- Spatial partitioning of the regulatory landscape of the X-inactivation centre
- (2012) Elphège P. Nora et al. NATURE
- Iterative correction of Hi-C data reveals hallmarks of chromosome organization
- (2012) Maxim Imakaev et al. NATURE METHODS
- ChromHMM: automating chromatin-state discovery and characterization
- (2012) Jason Ernst et al. NATURE METHODS
- Transcription factors: from enhancer binding to developmental control
- (2012) François Spitz et al. NATURE REVIEWS GENETICS
- Mechanisms of transcriptional precision in animal development
- (2012) Mounia Lagha et al. TRENDS IN GENETICS
- Enhancers as information integration hubs in development: lessons from genomics
- (2012) Christa Buecker et al. TRENDS IN GENETICS
- Shadow enhancers: Frequently asked questions about distributed cis-regulatory information and enhancer redundancy
- (2011) Scott Barolo BIOESSAYS
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- (2011) Gabriel E. Zentner et al. GENOME RESEARCH
- Large-scale analysis of the regulatory architecture of the mouse genome with a transposon-associated sensor
- (2011) Sandra Ruf et al. NATURE GENETICS
- Shadow Enhancers Foster Robustness of Drosophila Gastrulation
- (2010) Michael W. Perry et al. CURRENT BIOLOGY
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- (2010) Alvaro Rada-Iglesias et al. NATURE
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- TopHat: discovering splice junctions with RNA-Seq
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- Molecular stages of rapid and uniform neuralization of human embryonic stem cells
- (2009) R Bajpai et al. CELL DEATH AND DIFFERENTIATION
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- Enhancers: The abundance and function of regulatory sequences beyond promoters
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- Histone modifications at human enhancers reflect global cell-type-specific gene expression
- (2009) Nathaniel D. Heintzman et al. NATURE
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
- Shadow Enhancers as a Source of Evolutionary Novelty
- (2008) J.-W. Hong et al. SCIENCE
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