Genotyping by sequencing reveals contrasting patterns of population structure, ecologically mediated divergence, and long-distance dispersal in North American palms

Persistent effects of pre-Columbian plant domestication on Amazonian forest composition

(2017) C. Levis et al.   SCIENCE

Adaptive and non-adaptive divergence in a common landscape

(2017) Joost A. M. Raeymaekers et al.   Nature Communications

Molecular genetic analysis of two native desert palm genera, Washingtonia and Brahea , from the Baja California Peninsula and Guadalupe Island

(2017) Anastasia Klimova et al.   Ecology and Evolution

RAD sequencing resolves fine-scale population structure in a benthic invertebrate: implications for understanding phenotypic plasticity

(2017) David L. J. Vendrami et al.   Royal Society Open Science

Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions

(2016) Sean Hoban et al.   AMERICAN NATURALIST

Species limits, geographical distribution and genetic diversity inJohannesteijsmannia(Arecaceae)

(2016) Christine D. Bacon et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Adaptive divergence despite strong genetic drift: genomic analysis of the evolutionary mechanisms causing genetic differentiation in the island fox (Urocyon littoralis)

(2016) W. Chris Funk et al.   MOLECULAR ECOLOGY

Seascape genomics provides evidence for thermal adaptation and current-mediated population structure in American lobster (Homarus americanus )

(2016) Laura Benestan et al.   MOLECULAR ECOLOGY

Harnessing the power of RADseq for ecological and evolutionary genomics

(2016) Kimberly R. Andrews et al.   NATURE REVIEWS GENETICS

In the light of evolution X: Comparative phylogeography

(2016) John C. Avise et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolutionary lessons from California plant phylogeography

(2016) Victoria L. Sork et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Toward a paradigm shift in comparative phylogeography driven by trait-based hypotheses

(2016) Anna Papadopoulou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bioinformatic processing of RAD-seq data dramatically impacts downstream population genetic inference

(2016) Aaron B. A. Shafer et al.   Methods in Ecology and Evolution

The challenge of separating signatures of local adaptation from those of isolation by distance and colonization history: The case of two white pines

(2016) Simon Nadeau et al.   Ecology and Evolution

LEA: AnRpackage for landscape and ecological association studies

(2015) Eric Frichot et al.   Methods in Ecology and Evolution

Identification of outliers in a genomic scan for selection along environmental gradients in the bamboo locust, Ceracris kiangsu

(2015) Xiao-Jing Feng et al.   Scientific Reports

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

Ecological speciation in the tropics: insights from comparative genetic studies in Amazonia

(2015) Luciano B. Beheregaray et al.   Frontiers in Genetics

Relative contributions of neutral and non-neutral genetic differentiation to inform conservation of steelhead trout across highly variable landscapes

(2014) Andrew P. Matala et al.   Evolutionary Applications

Fast and Efficient Estimation of Individual Ancestry Coefficients

(2014) Eric Frichot et al.   GENETICS

A Novel and Fast Approach for Population Structure Inference Using Kernel-PCA and Optimization

(2014) Andrei-Alin Popescu et al.   GENETICS

Genomics of the divergence continuum in an African plant biodiversity hotspot, I: drivers of population divergence inRestio capensis(Restionaceae)

(2014) C. Lexer et al.   MOLECULAR ECOLOGY

The advantages of going large: genome-wide SNPs clarify the complex population history and systematics of the threatened western pond turtle

(2014) Phillip Q. Spinks et al.   MOLECULAR ECOLOGY

Isolation by environment

(2014) Ian J. Wang et al.   MOLECULAR ECOLOGY

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

High-throughput sequencing reveals inbreeding depression in a natural population

(2014) J. I. Hoffman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Climate relicts and their associated communities as natural ecology and evolution laboratories

(2014) Scott A. Woolbright et al.   TRENDS IN ECOLOGY & EVOLUTION

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

Tropical rain forest evolution: palms as a model group

(2013) Thomas LP Couvreur et al.   BMC BIOLOGY

Widespread evidence for incipient ecological speciation: a meta-analysis of isolation-by-ecology

(2013) Aaron B. A. Shafer et al.   ECOLOGY LETTERS

Testing for Associations between Loci and Environmental Gradients Using Latent Factor Mixed Models

(2013) Eric Frichot et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genotyping-by-sequencing in ecological and conservation genomics

(2013) Shawn R. Narum et al.   MOLECULAR ECOLOGY

StAMPP: an R package for calculation of genetic differentiation and structure of mixed-ploidy level populations

(2013) Luke W. Pembleton et al.   Molecular Ecology Resources

Ecological genomics of local adaptation

(2013) Outi Savolainen et al.   NATURE REVIEWS GENETICS

Evolution in subdivided plant populations: concepts, recent advances and future directions

(2013) John R. Pannell et al.   NEW PHYTOLOGIST

Genotyping-by-Sequencing (GBS): A Novel, Efficient and Cost-Effective Genotyping Method for Cattle Using Next-Generation Sequencing

(2013) Marcos De Donato et al.   PLoS One

Speciation on Oceanic Islands: Rapid Adaptive Divergence vs. Cryptic Speciation in a Guadalupe Island Songbird (Aves: Junco)

(2013) Pau Aleixandre et al.   PLoS One

Surviving in Mountain Climate Refugia: New Insights from the Genetic Diversity and Structure of the Relict Shrub Myrtus nivellei (Myrtaceae) in the Sahara Desert

(2013) Jérémy Migliore et al.   PLoS One

Can phylogenetic signal, character displacement, or random phenotypic drift explain the morphological variation in the genus Geonoma (Arecaceae)?

(2012) JULISSA RONCAL et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Historical evidence of the Spanish introduction of date palm (Phoenix dactylifera L., Arecaceae) into the Americas

(2012) D. Rivera et al.   GENETIC RESOURCES AND CROP EVOLUTION

Ancient Admixture in Human History

(2012) N. Patterson et al.   GENETICS

Global biogeography and diversification of palms sheds light on the evolution of tropical lineages. I. Historical biogeography

(2012) William J. Baker et al.   JOURNAL OF BIOGEOGRAPHY

Inferring Species Trees Directly from Biallelic Genetic Markers: Bypassing Gene Trees in a Full Coalescent Analysis

(2012) David Bryant et al.   MOLECULAR BIOLOGY AND EVOLUTION

The trouble with isolation by distance

(2012) PATRICK G. MEIRMANS   MOLECULAR ECOLOGY

Population genomic signatures of divergent adaptation, gene flow and hybrid speciation in the rapid radiation of Lake Victoria cichlid fishes

(2012) I. Keller et al.   MOLECULAR ECOLOGY

Cenozoic imprints on the phylogenetic structure of palm species assemblages worldwide

(2012) W. D. Kissling et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Not an ancient relic: the endemic Livistona palms of arid central Australia could have been introduced by humans

(2012) T. Kondo et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Brahea edulis palm forest in Guadalupe Island: A North American fog oasis?

(2012) PEDRO P GARCILLÁN et al.   REVISTA CHILENA DE HISTORIA NATURAL

Miocene Dispersal Drives Island Radiations in the Palm Tribe Trachycarpeae (Arecaceae)

(2012) Christine D. Bacon et al.   SYSTEMATIC BIOLOGY

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

A family portrait: unravelling the complexities of palms

(2011) James W. Tregear et al.   ANNALS OF BOTANY

Geographical ecology of the palms (Arecaceae): determinants of diversity and distributions across spatial scales

(2011) Wolf L. Eiserhardt et al.   ANNALS OF BOTANY

Climate Relicts: Past, Present, Future

(2011) Arndt Hampe et al.   Annual Review of Ecology Evolution and Systematics

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Origin and global diversification patterns of tropical rain forests: inferences from a complete genus-level phylogeny of palms

(2011) Thomas LP Couvreur et al.   BMC BIOLOGY

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Evolutionary genetics of plant adaptation

(2011) Jill T. Anderson et al.   TRENDS IN GENETICS

DensiTree: making sense of sets of phylogenetic trees

(2010) R. R. Bouckaert   BIOINFORMATICS

Effects of brooding and broadcasting reproductive modes on the population genetic structure of two Antarctic gastropod molluscs

(2010) J. I. Hoffman et al.   MARINE BIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Patterns of frugivory, seed dispersal and predation of blue fan palms (Brahea armata) in oases of northern Baja California

(2009) E.V. Wehncke et al.   JOURNAL OF ARID ENVIRONMENTS

Phylogeography’s past, present, and future: 10 years after Avise, 2000

(2009) M.J. Hickerson et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Blue fan palm distribution and seed removal patterns in three desert oases of northern Baja California, Mexico

(2009) Elisabet V. Wehncke et al.   PLANT ECOLOGY

Quaternary rift flank uplift of the Peninsular Ranges in Baja and southern California by removal of mantle lithosphere

(2009) Karl Mueller et al.   TECTONICS

Climate change mitigation: A spatial analysis of global land suitability for clean development mechanism afforestation and reforestation

(2008) Robert J. Zomer et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

FINE-SCALE PHYLOGEOGRAPHIC CONGRUENCE DESPITE DEMOGRAPHIC INCONGRUENCE IN TWO LOW-MOBILITY SAPROXYLIC SPRINGTAILS

(2008) Ryan C. Garrick et al.   EVOLUTION