Evolution in subdivided plant populations: concepts, recent advances and future directions

Saturated linkage map construction in Rubus idaeus using genotyping by sequencing and genome-independent imputation

(2013) Judson A Ward et al.   BMC GENOMICS

Exegeses on Maximum Genetic Differentiation

(2013) F. Rousset   GENETICS

Robust Identification of Local Adaptation from Allele Frequencies

(2013) T. Gunther et al.   GENETICS

On the measurements of genetic differentiation among populations

(2013) J. WANG   Genetics Research

Estimating and interpreting FST: The impact of rare variants

(2013) G. Bhatia et al.   GENOME RESEARCH

Molecular divergence in tropical tree populations occupying environmental mosaics

(2013) D. Audigeos et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Testing for Associations between Loci and Environmental Gradients Using Latent Factor Mixed Models

(2013) Eric Frichot et al.   MOLECULAR BIOLOGY AND EVOLUTION

Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations

(2013) Stéphane De Mita et al.   MOLECULAR ECOLOGY

Genotyping-by-sequencing in ecological and conservation genomics

(2013) Shawn R. Narum et al.   MOLECULAR ECOLOGY

Genomic islands of divergence are not affected by geography of speciation in sunflowers

(2013) S. Renaut et al.   Nature Communications

Switchgrass Genomic Diversity, Ploidy, and Evolution: Novel Insights from a Network-Based SNP Discovery Protocol

(2013) Fei Lu et al.   PLoS Genetics

Adaptive Genetic Variation on the Landscape: Methods and Cases

(2012) Sean D. Schoville et al.   Annual Review of Ecology Evolution and Systematics

Estimating Population-Level Coancestry Coefficients by an Admixture F Model

(2012) M. Karhunen et al.   GENETICS

The Relationship Between FST and the Frequency of the Most Frequent Allele

(2012) M. Jakobsson et al.   GENETICS

AMOVA-Based Clustering of Population Genetic Data

(2012) Patrick G. Meirmans   JOURNAL OF HEREDITY

Local Adaptation in the Flowering-Time Gene Network of Balsam Poplar, Populus balsamifera L.

(2012) S. R. Keller et al.   MOLECULAR BIOLOGY AND EVOLUTION

Parallel and lineage-specific molecular adaptation to climate in boreal black spruce

(2012) JULIEN PRUNIER et al.   MOLECULAR ECOLOGY

The effect of RAD allele dropout on the estimation of genetic variation within and between populations

(2012) Mathieu Gautier et al.   MOLECULAR ECOLOGY

Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation

(2012) Catherine E. Wagner et al.   MOLECULAR ECOLOGY

Forecasting changes in population genetic structure of alpine plants in response to global warming

(2012) FLORA JAY et al.   MOLECULAR ECOLOGY

mmod: an R library for the calculation of population differentiation statistics

(2012) David J. Winter   Molecular Ecology Resources

Evidence of widespread selection on standing variation in Europe at height-associated SNPs

(2012) Michael C Turchin et al.   NATURE GENETICS

Arabidopsis thaliana as a model for the genetics of local adaptation

(2012) Brandon Gaut   NATURE GENETICS

Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel

(2012) Matthew W Horton et al.   NATURE GENETICS

Effects of population size and isolation on heterosis, mean fitness, and inbreeding depression in a perennial plant

(2012) Christopher G. Oakley et al.   NEW PHYTOLOGIST

Local adaptation in The model plant

(2012) David B. Lowry   NEW PHYTOLOGIST

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Source population characteristics affect heterosis following genetic rescue of fragmented plant populations

(2012) M. Pickup et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

ELIMINATION OF A GENETIC CORRELATION BETWEEN THE SEXES VIA ARTIFICIAL CORRELATIONAL SELECTION

(2011) Lynda F. Delph et al.   EVOLUTION

A New Method to Uncover Signatures of Divergent and Stabilizing Selection in Quantitative Traits

(2011) Otso Ovaskainen et al.   GENETICS

Genetic differences among populations in sexual dimorphism: evidence for selection on males in a dioecious plant

(2011) Q. YU et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Contrasting Patterns of Pollen and Seed Flow Influence the Spatial Genetic Structure of Sweet Vernal Grass (Anthoxanthum odoratum) Populations

(2011) Joanna R. Freeland et al.   JOURNAL OF HEREDITY

Comparisons between QST and FST-how wrong have we been?

(2011) PIM EDELAAR et al.   MOLECULAR ECOLOGY

The coupling hypothesis: why genome scans may fail to map local adaptation genes

(2011) NICOLAS BIERNE et al.   MOLECULAR ECOLOGY

and D do not replace FST

(2011) MICHAEL C. WHITLOCK   MOLECULAR ECOLOGY

De novo transcriptome assembly and polymorphism detection in the flowering plant Silene vulgaris (Caryophyllaceae)

(2011) DANIEL B. SLOAN et al.   Molecular Ecology Resources

Current trends in microsatellite genotyping

(2011) E. GUICHOUX et al.   Molecular Ecology Resources

Whole-genome sequencing of multiple Arabidopsis thaliana populations

(2011) Jun Cao et al.   NATURE GENETICS

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

A Map of Local Adaptation in Arabidopsis thaliana

(2011) A. Fournier-Level et al.   SCIENCE

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

Patterns of Population Structure and Environmental Associations to Aridity Across the Range of Loblolly Pine (Pinus taeda L., Pinaceae)

(2010) A. J. Eckert et al.   GENETICS

Using Environmental Correlations to Identify Loci Underlying Local Adaptation

(2010) G. Coop et al.   GENETICS

Selection pressures have caused genome-wide population differentiation ofAnthoxanthum odoratumdespite the potential for high gene flow

(2010) J. R. FREELAND et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Molecular Footprints of Local Adaptation in Two Mediterranean Conifers

(2010) D. Grivet et al.   MOLECULAR BIOLOGY AND EVOLUTION

Effects of fine-scale genetic structure on male mating success in gynodioeciousBeta vulgarisssp.maritima

(2010) ISABELLE DE CAUWER et al.   MOLECULAR ECOLOGY

Extremely low genetic variability and highly structured local populations of Arabidopsis thaliana at higher latitudes

(2010) A. M. LEWANDOWSKA-SABAT et al.   MOLECULAR ECOLOGY

The ‘New Wave’ in plant demographic inference: more loci and more individuals

(2010) MARTIN LASCOUX et al.   MOLECULAR ECOLOGY

Quantifying population structure using the F-model

(2010) OSCAR E. GAGGIOTTI et al.   Molecular Ecology Resources

Assessing population structure: FST and related measures

(2010) PATRICK G. MEIRMANS et al.   Molecular Ecology Resources

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

(2010) Susanna Atwell et al.   NATURE

Population resequencing reveals local adaptation of Arabidopsis lyrata to serpentine soils

(2010) Thomas L Turner et al.   NATURE GENETICS

The Scale of Population Structure in Arabidopsis thaliana

(2010) Alexander Platt et al.   PLoS Genetics

Estimating Divergence Parameters With Small Samples From a Large Number of Loci

(2009) Y. Wang et al.   GENETICS

The Impact of Sampling Schemes on the Site Frequency Spectrum in Nonequilibrium Subdivided Populations

(2009) T. Stadler et al.   GENETICS

Testing for Spatially Divergent Selection: Comparing QST to FST

(2009) M. C. Whitlock et al.   GENETICS

Inbreeding depression in dioecious populations of the plant Mercurialis annua: comparisons between outcrossed progeny and the progeny of self-fertilized feminized males

(2009) S M Eppley et al.   HEREDITY

Detecting loci under selection in a hierarchically structured population

(2009) L Excoffier et al.   HEREDITY

A Bayesian Hierarchical Model for Analysis of Single-Nucleotide Polymorphisms Diversity in Multilocus, Multipopulation Samples

(2009) Feng Guo et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

GSTis still a useful measure of genetic differentiation - a comment on Jost'sD

(2009) NILS RYMAN et al.   MOLECULAR ECOLOGY

smogd: software for the measurement of genetic diversity

(2009) NICHOLAS G. CRAWFORD   Molecular Ecology Resources

The genetics of inbreeding depression

(2009) Deborah Charlesworth et al.   NATURE REVIEWS GENETICS

Reduced inbreeding depression after species range expansion

(2009) B. Pujol et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effects of Selection and Drift on G Matrix Evolution in a Heterogeneous Environment: A Multivariate Qst-Fst Test With the Freshwater Snail Galba truncatula

(2008) E. Chapuis et al.   GENETICS

Low Levels of Polymorphism in Genes That Control the Activation of Defense Response in Arabidopsis thaliana

(2008) E. G. Bakker et al.   GENETICS

A New Bayesian Method to Identify the Environmental Factors That Influence Recent Migration

(2008) P. Faubet et al.   GENETICS

Multivariate Qst-Fst Comparisons: A Neutrality Test for the Evolution of the G Matrix in Structured Populations

(2008) G. Martin et al.   GENETICS

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

The Different Sources of Variation in Inbreeding Depression, Heterosis and Outbreeding Depression in a Metapopulation of Physa acuta

(2008) Juan Sebastián Escobar et al.   GENETICS

AreQST-FSTcomparisons for natural populations meaningful?

(2008) B. PUJOL et al.   MOLECULAR ECOLOGY

GSTand its relatives do not measure differentiation

(2008) LOU JOST   MOLECULAR ECOLOGY

Next-generation genetics in plants

(2008) Magnus Nordborg et al.   NATURE

Genomic Analysis of Differentiation between Soil Types Reveals Candidate Genes for Local Adaptation in Arabidopsis lyrata

(2008) Thomas L. Turner et al.   PLoS One

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

Reduced Responses to Selection After Species Range Expansion

(2008) B. Pujol et al.   SCIENCE