The challenge of separating signatures of local adaptation from those of isolation by distance and colonization history: The case of two white pines

Post-glacial phylogeography and evolution of a wide-ranging highly-exploited keystone forest tree, eastern white pine (Pinus strobus) in North America: single refugium, multiple routes

(2016) John W. R. Zinck et al.   BMC EVOLUTIONARY BIOLOGY

Convergent local adaptation to climate in distantly related conifers

(2016) S. Yeaman et al.   SCIENCE

Locally Downscaled and Spatially Customizable Climate Data for Historical and Future Periods for North America

(2016) Tongli Wang et al.   PLoS One

Single-Locus versus Multilocus Patterns of Local Adaptation to Climate in Eastern White Pine (Pinus strobus, Pinaceae)

(2016) Om P. Rajora et al.   PLoS One

Contrasting patterns of genetic diversity across the ranges of Pinus monticola and P. strobus : A comparison between eastern and western North American postglacial colonization histories

(2015) Simon Nadeau et al.   AMERICAN JOURNAL OF BOTANY

Local Adaptation by Alleles of Small Effect

(2015) Sam Yeaman   AMERICAN NATURALIST

Genetic Adaptation to Climate in White Spruce Involves Small to Moderate Allele Frequency Shifts in Functionally Diverse Genes

(2015) Benjamin Hornoy et al.   Genome Biology and Evolution

Detecting adaptive evolution based on association with ecological gradients: Orientation matters!

(2015) E Frichot et al.   HEREDITY

Genetic and morphological differentiation inPopulus nigraL.: isolation by colonization or isolation by adaptation?

(2015) Jennifer DeWoody et al.   MOLECULAR ECOLOGY

Seven common mistakes in population genetics and how to avoid them

(2015) Patrick G. Meirmans   MOLECULAR ECOLOGY

The relative power of genome scans to detect local adaptation depends on sampling design and statistical method

(2015) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

LEA: AnRpackage for landscape and ecological association studies

(2015) Eric Frichot et al.   Methods in Ecology and Evolution

Clinal Variation at Phenology-Related Genes in Spruce: Parallel Evolution in FTL2 and Gigantea?

(2014) J. Chen et al.   GENETICS

Genomic Signature of Adaptation to Climate inMedicago truncatula

(2014) Jeremy B. Yoder et al.   GENETICS

Molecular Proxies for Climate Maladaptation in a Long-Lived Tree (Pinus pinaster Aiton, Pinaceae)

(2014) J.-P. Jaramillo-Correa et al.   GENETICS

Isolation by environment

(2014) Ian J. Wang et al.   MOLECULAR ECOLOGY

Climatic adaptation and ecological divergence between two closely related pine species in Southeast China

(2014) Yongfeng Zhou et al.   MOLECULAR ECOLOGY

Landscape genomics and a common garden trial reveal adaptive differentiation to temperature across Europe in the tree speciesAlnus glutinosa

(2014) Hanne De Kort et al.   MOLECULAR ECOLOGY

Evaluation of demographic history and neutral parameterization on the performance ofFSToutlier tests

(2014) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Genome scan methods against more complex models: when and how much should we trust them?

(2014) Pierre de Villemereuil et al.   MOLECULAR ECOLOGY

Evaluation of genetic isolation within an island flora reveals unusually widespread local adaptation and supports sympatric speciation

(2014) A. S. T. Papadopulos et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Widespread evidence for incipient ecological speciation: a meta-analysis of isolation-by-ecology

(2013) Aaron B. A. Shafer et al.   ECOLOGY LETTERS

GENETIC ISOLATION BY ENVIRONMENT OR DISTANCE: WHICH PATTERN OF GENE FLOW IS MOST COMMON?

(2013) Jason P. Sexton et al.   EVOLUTION

Climatic niche, ecological genetics, and impact of climate change on eastern white pine (Pinus strobus L.): Guidelines for land managers

(2013) Dennis G. Joyce et al.   FOREST ECOLOGY AND MANAGEMENT

Robust Identification of Local Adaptation from Allele Frequencies

(2013) T. Gunther et al.   GENETICS

Potential for evolutionary responses to climate change - evidence from tree populations

(2013) Florian J. Alberto et al.   GLOBAL CHANGE BIOLOGY

Testing for Associations between Loci and Environmental Gradients Using Latent Factor Mixed Models

(2013) Eric Frichot et al.   MOLECULAR BIOLOGY AND EVOLUTION

Stronger spatial genetic structure in recolonized areas than in refugia in the European beech

(2013) Guillaume de Lafontaine et al.   MOLECULAR ECOLOGY

Multilocus analyses reveal little evidence for lineage-wide adaptive evolution within major clades of soft pines (PinussubgenusStrobus)

(2013) Andrew J. Eckert et al.   MOLECULAR ECOLOGY

Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations

(2013) Stéphane De Mita et al.   MOLECULAR ECOLOGY

Drivers of population genetic differentiation in the wild: isolation by dispersal limitation, isolation by adaptation and isolation by colonization

(2013) Luisa Orsini et al.   MOLECULAR ECOLOGY

The genetic causes of convergent evolution

(2013) David L. Stern   NATURE REVIEWS GENETICS

Environmental versus geographical determinants of genetic structure in two subalpine conifers

(2013) Elena Mosca et al.   NEW PHYTOLOGIST

Putting the landscape into the genomics of trees: approaches for understanding local adaptation and population responses to changing climate

(2013) V. L. Sork et al.   Tree Genetics & Genomes

A spruce gene map infers ancient plant genome reshuffling and subsequent slow evolution in the gymnosperm lineage leading to extant conifers

(2012) Nathalie Pavy et al.   BMC BIOLOGY

The trouble with isolation by distance

(2012) PATRICK G. MEIRMANS   MOLECULAR ECOLOGY

The geographical and environmental determinants of genetic diversity for four alpine conifers of the European Alps

(2012) E. Mosca et al.   MOLECULAR ECOLOGY

Characterizing genomic variation ofArabidopsis thaliana: the roles of geography and climate

(2012) JESSE R. LASKY et al.   MOLECULAR ECOLOGY

The genetic differentiation at quantitative trait loci under local adaptation

(2012) VALÉRIE LE CORRE et al.   MOLECULAR ECOLOGY

The genomic basis of adaptive evolution in threespine sticklebacks

(2012) Felicity C. Jones et al.   NATURE

The genomics of speciation-with-gene-flow

(2012) Jeffrey L. Feder et al.   TRENDS IN GENETICS

QTL mapping in white spruce: gene maps and genomic regions underlying adaptive traits across pedigrees, years and environments

(2011) Betty Pelgas et al.   BMC GENOMICS

THE GENETIC ARCHITECTURE OF ADAPTATION UNDER MIGRATION-SELECTION BALANCE

(2011) Sam Yeaman et al.   EVOLUTION

Scanning the genome for gene SNPs related to climate adaptation and estimating selection at the molecular level in boreal black spruce

(2011) JULIEN PRUNIER et al.   MOLECULAR ECOLOGY

Quantifying effects of environmental and geographical factors on patterns of genetic differentiation

(2011) CHENG-RUEI LEE et al.   MOLECULAR ECOLOGY

The coupling hypothesis: why genome scans may fail to map local adaptation genes

(2011) NICOLAS BIERNE et al.   MOLECULAR ECOLOGY

A White Spruce Gene Catalog for Conifer Genome Analyses

(2011) Philippe Rigault et al.   PLANT PHYSIOLOGY

Using Environmental Correlations to Identify Loci Underlying Local Adaptation

(2010) G. Coop et al.   GENETICS

Molecular Evolution of Regulatory Genes in Spruces from Different Species and Continents: Heterogeneous Patterns of Linkage Disequilibrium and Selection but Correlated Recent Demographic Changes

(2010) Marie-Claire Namroud et al.   JOURNAL OF MOLECULAR EVOLUTION

Molecular Footprints of Local Adaptation in Two Mediterranean Conifers

(2010) D. Grivet et al.   MOLECULAR BIOLOGY AND EVOLUTION

Tracking genes of ecological relevance using a genome scan in two independent regional population samples of Arabis alpina

(2010) BÉNÉDICTE N. PONCET et al.   MOLECULAR ECOLOGY

Gene movement and genetic association with regional climate gradients in California valley oak (Quercus lobata Née) in the face of climate change

(2010) VICTORIA L. SORK et al.   MOLECULAR ECOLOGY

Back to nature: ecological genomics of loblolly pine (Pinus taeda, Pinaceae)

(2010) ANDREW J. ECKERT et al.   MOLECULAR ECOLOGY

Molecular events of apical bud formation in white spruce, Picea glauca

(2010) WALID EL KAYAL et al.   PLANT CELL AND ENVIRONMENT

THE EFFICACY OF DIVERGENCE HITCHHIKING IN GENERATING GENOMIC ISLANDS DURING ECOLOGICAL SPECIATION

(2009) Jeffrey L. Feder et al.   EVOLUTION

Detecting loci under selection in a hierarchically structured population

(2009) L Excoffier et al.   HEREDITY

Congruent Climate‐Related Genecological Responses from Molecular Markers and Quantitative Traits for Western White Pine (Pinus monticola)

(2009) Bryce A. Richardson et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Assessing genetic diversity and structure of fragmented populations of eastern white pine (Pinus strobus) and western white pine (P. monticola) for conservation management

(2009) M. Mehes et al.   Journal of Plant Ecology

Genetic structure is correlated with phenotypic divergence rather than geographic isolation in the highly polymorphic strawberry poison-dart frog

(2009) IAN J. WANG et al.   MOLECULAR ECOLOGY

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Use of Simultaneous Analyses to Guide Fossil‐Based Calibrations of Pinaceae Phylogeny

(2008) David S. Gernandt et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Global monitoring of autumn gene expression within and among phenotypically divergent populations of Sitka spruce (Picea sitchensis)

(2008) Jason A. Holliday et al.   NEW PHYTOLOGIST

Convergence and parallelism reconsidered: what have we learned about the genetics of adaptation?

(2007) J ARENDT et al.   TRENDS IN ECOLOGY & EVOLUTION