Second-generation PLINK: rising to the challenge of larger and richer datasets

Compression and fast retrieval of SNP data

(2014) F. Sambo et al.   BIOINFORMATICS

Efficient haplotype block recognition of very long and dense genetic sequences

(2014) Daniel Taliun et al.   BMC BIOINFORMATICS

Applying compressed sensing to genome-wide association studies

(2014) Shashaank Vattikuti et al.   GigaScience

Improving the Accuracy and Efficiency of Identity-by-Descent Detection in Population Data

(2013) B. L. Browning et al.   GENETICS

PERMORY-MPI: a program for high-speed parallel permutation testing in genome-wide association studies

(2012) V. Steiss et al.   BIOINFORMATICS

Simulating Realistic Genomic Data With Rare Variants

(2012) Yaji Xu et al.   GENETIC EPIDEMIOLOGY

An integrated map of genetic variation from 1,092 human genomes

(2012)   NATURE

Compressive genomics

(2012) Po-Ru Loh et al.   NATURE BIOTECHNOLOGY

Improved Statistics for Genome-Wide Interaction Analysis

(2012) Masao Ueki et al.   PLoS Genetics

A Fast, Powerful Method for Detecting Identity by Descent

(2011) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

HAPGEN2: simulation of multiple disease SNPs

(2011) Zhan Su et al.   BIOINFORMATICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Anatomy of High-Performance 2D Similarity Calculations

(2011) Imran S. Haque et al.   Journal of Chemical Information and Modeling

BOOST: A Fast Approach to Detecting Gene-Gene Interactions in Genome-wide Case-Control Studies

(2010) Xiang Wan et al.   AMERICAN JOURNAL OF HUMAN GENETICS

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Recommended tests for association in 2×2 tables

(2009) Stian Lydersen et al.   STATISTICS IN MEDICINE

A Flexible and Accurate Genotype Imputation Method for the Next Generation of Genome-Wide Association Studies

(2009) Bryan N. Howie et al.   PLoS Genetics

PRESTO: Rapid calculation of order statistic distributions and multiple-testing adjusted P-values via permutation for one and two-stage genetic association studies

(2008) Brian L Browning   BMC BIOINFORMATICS

A Review of Family-Based Tests for Linkage Disequilibrium between a Quantitative Trait and a Genetic Marker

(2008) Warren J. Ewens et al.   PLoS Genetics