Specific plasmid patterns and high rates of bacterial co-occurrence within the coral holobiont

Microbial contributions to the persistence of coral reefs

(2017) Nicole S Webster et al.   ISME Journal

Pathobiomes Differ between Two Diseases Affecting Reef Building Coralline Algae

(2017) Anne-Leila Meistertzheim et al.   Frontiers in Microbiology

Broadcast Spawning Coral Mussismilia hispida Can Vertically Transfer its Associated Bacterial Core

(2017) Deborah C. A. Leite et al.   Frontiers in Microbiology

Beneficial Microorganisms for Corals (BMC): Proposed Mechanisms for Coral Health and Resilience

(2017) Raquel S. Peixoto et al.   Frontiers in Microbiology

The contribution of microbial biotechnology to mitigating coral reef degradation

(2017) Katarina Damjanovic et al.   Microbial Biotechnology

Positive selection inhibits gene mobilization and transfer in soil bacterial communities

(2017) James P. J. Hall et al.   Nature Ecology & Evolution

Intraspecific differences in molecular stress responses and coral pathobiome contribute to mortality under bacterial challenge in Acropora millepora

(2017) Rachel M. Wright et al.   Scientific Reports

The Microbial Signature Provides Insight into the Mechanistic Basis of Coral Success across Reef Habitats

(2016) Alejandra Hernandez-Agreda et al.   mBio

Comparative genomics explains the evolutionary success of reef-forming corals

(2016) Debashish Bhattacharya et al.   eLife

Microbial Dysbiosis: Rethinking Disease in Marine Ecosystems

(2016) Suhelen Egan et al.   Frontiers in Microbiology

Multi-Partner Interactions in Corals in the Face of Climate Change

(2016) Koty H. Sharp et al.   BIOLOGICAL BULLETIN

Power and sample-size estimation for microbiome studies using pairwise distances and PERMANOVA

(2015) Brendan J. Kelly et al.   BIOINFORMATICS

Impact of oil spills on coral reefs can be reduced by bioremediation using probiotic microbiota

(2015) Henrique Fragoso ados Santos et al.   Scientific Reports

Shifts in Abundance and Diversity of Mobile Genetic Elements after the Introduction of Diverse Pesticides into an On-Farm Biopurification System over the Course of a Year

(2014) Simone Dealtry et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Defining dysbiosis and its influence on host immunity and disease

(2014) Charisse Petersen et al.   CELLULAR MICROBIOLOGY

The mycosphere constitutes an arena for horizontal gene transfer with strong evolutionary implications for bacterial-fungal interactions

(2014) MiaoZhi Zhang et al.   FEMS MICROBIOLOGY ECOLOGY

Climate change affects key nitrogen-fixing bacterial populations on coral reefs

(2014) Henrique F Santos et al.   ISME Journal

Dynamics of bacterial community succession in a salt marsh chronosequence: evidences for temporal niche partitioning

(2014) Francisco Dini-Andreote et al.   ISME Journal

Using the class 1 integron-integrase gene as a proxy for anthropogenic pollution

(2014) Michael R Gillings et al.   ISME Journal

Microbiota of the Major South Atlantic Reef Building Coral Mussismilia

(2014) Samodha C. Fernando et al.   MICROBIAL ECOLOGY

Onset and establishment of diazotrophs and other bacterial associates in the early life history stages of the coralAcropora millepora

(2014) Kimberley A. Lema et al.   MOLECULAR ECOLOGY

Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors

(2014) L. W. Kelly et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

TheMontastraea faveolatamicrobiome: ecological and temporal influences on a Caribbean reef-building coral in decline

(2013) Nikole E. Kimes et al.   ENVIRONMENTAL MICROBIOLOGY

Metagenomic Analysis of Healthy and White Plague-Affected Mussismilia braziliensis Corals

(2013) Gizele D. Garcia et al.   MICROBIAL ECOLOGY

Effect of Sugarcane Burning or Green Harvest Methods on the Brazilian Cerrado Soil Bacterial Community Structure

(2013) Caio T. C. C. Rachid et al.   PLoS One

Coral-associated micro-organisms and their roles in promoting coral health and thwarting diseases

(2013) C. J. Krediet et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Broad-host-range IncP-1 plasmids and their resistance potential

(2013) Magdalena Popowska et al.   Frontiers in Microbiology

Microbial diversity and anaerobic hydrocarbon degradation potential in an oil-contaminated mangrove sediment

(2012) Luiza L Andrade et al.   BMC MICROBIOLOGY

Microbial Community Compositional Shifts in Bleached Colonies of the Brazilian Reef-Building Coral Siderastrea stellata

(2012) Monica M. Lins-de-Barros et al.   MICROBIAL ECOLOGY

Intergenerational Transfer of Specific Bacteria in Corals and Possible Implications for Offspring Fitness

(2012) Janja Ceh et al.   MICROBIAL ECOLOGY

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Coral-Bacterial Communities before and after a Coral Mass Spawning Event on Ningaloo Reef

(2012) Janja Ceh et al.   PLoS One

From Parent to Gamete: Vertical Transmission of Symbiodinium (Dinophyceae) ITS2 Sequence Assemblages in the Reef Building Coral Montipora capitata

(2012) Jacqueline L. Padilla-Gamiño et al.   PLoS One

Beyond the Venn diagram: the hunt for a core microbiome

(2011) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Diversity and dynamics of bacterial communities in early life stages of the Caribbean coral Porites astreoides

(2011) Koty H Sharp et al.   ISME Journal

Shifts in bacterial communities of two caribbean reef-building coral species affected by white plague disease

(2011) Anny Cárdenas et al.   ISME Journal

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Bacterial communities reflect the spatial variation in pollutant levels in Brazilian mangrove sediment

(2010) R. Peixoto et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Coral-Associated Bacterial Assemblages: Current Knowledge and the Potential for Climate-Driven Impacts

(2010) Morgan E. Mouchka et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Bacterial Community Associated with Healthy and Diseased Reef Coral Mussismilia hispida from Eastern Brazil

(2010) Alinne Pereira de Castro et al.   MICROBIAL ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Threatened Corals Provide Underexplored Microbial Habitats

(2010) Shinichi Sunagawa et al.   PLoS One

Bacterial Acquisition in Juveniles of Several Broadcast Spawning Coral Species

(2010) Koty H. Sharp et al.   PLoS One

18S rDNA Sequences from Microeukaryotes Reveal Oil Indicators in Mangrove Sediment

(2010) Henrique F. Santos et al.   PLoS One

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plasmids captured in C. metallidurans CH34: defining the PromA family of broad-host-range plasmids

(2009) Géraldine A. Van der Auwera et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Metagenomic analysis of stressed coral holobionts

(2009) Rebecca Vega Thurber et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial functional structure ofMontastraea faveolata, an important Caribbean reef-building coral, differs between healthy and yellow-band diseased colonies

(2009) Nikole E. Kimes et al.   ENVIRONMENTAL MICROBIOLOGY

Coral mucus-associated bacteria: a possible first line of defense

(2009) Maya Shnit-Orland et al.   FEMS MICROBIOLOGY ECOLOGY

The onset of microbial associations in the coral Pocillopora meandrina

(2009) Amy Apprill et al.   ISME Journal

Bacterial diversity associated with the Brazilian endemic reef coralMussismilia braziliensis

(2009) A.M.M. Reis et al.   JOURNAL OF APPLIED MICROBIOLOGY

Archaea, Bacteria, and Algal Plastids Associated with the Reef-Building Corals Siderastrea stellata and Mussismilia hispida from Búzios, South Atlantic Ocean, Brazil

(2009) Monica M. Lins-de-Barros et al.   MICROBIAL ECOLOGY

The future of coral reefs: a microbial perspective

(2009) Tracy D. Ainsworth et al.   TRENDS IN ECOLOGY & EVOLUTION