Intraspecific differences in molecular stress responses and coral pathobiome contribute to mortality under bacterial challenge in Acropora millepora

Associations between transcriptional changes and protein phenotypes provide insights into immune regulation in corals

(2016) Lauren E. Fuess et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Evaluation of TagSeq, a reliable low-cost alternative for RNAseq

(2016) Brian K. Lohman et al.   Molecular Ecology Resources

Multi-marker metabarcoding of coral skeletons reveals a rich microbiome and diverse evolutionary origins of endolithic algae

(2016) Vanessa Rossetto Marcelino et al.   Scientific Reports

A metabarcoding framework for facilitated survey of endolithic phototrophs with tufA

(2016) Thomas Sauvage et al.   BMC ECOLOGY

Uncovering the novel characteristics of Asian honey bee, Apis cerana, by whole genome sequencing

(2015) Doori Park et al.   BMC GENOMICS

Imaging the uptake of nitrogen-fixing bacteria into larvae of the coral Acropora millepora

(2015) Kimberley A Lema et al.   ISME Journal

White Syndrome inAcropora muricata:Nonspecific bacterial infection and ciliate histophagy

(2015) Michael Sweet et al.   MOLECULAR ECOLOGY

MCMC Methods for Multi-Response Generalized Linear Mixed Models: TheMCMCglmmRPackage

(2015) Jarrod D. Hadfield   Journal of Statistical Software

Identification of Candidate Coral Pathogens on White Band Disease-Infected Staghorn Coral

(2015) Sarah A. Gignoux-Wolfsohn et al.   PLoS One

Vibrio coralliilyticus Strain OCN008 Is an Etiological Agent of Acute Montipora White Syndrome

(2014) Blake Ushijima et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Transcriptomic analysis of differential host gene expression upon uptake of symbionts: a case study with Symbiodinium and the major bioeroding sponge Cliona varians

(2014) Ana Riesgo et al.   BMC GENOMICS

Coral transcriptome and bacterial community profiles reveal distinct Yellow Band Disease states in Orbicella faveolata

(2014) Collin J Closek et al.   ISME Journal

Transcriptome of American Oysters, Crassostrea virginica, in Response to Bacterial Challenge: Insights into Potential Mechanisms of Disease Resistance

(2014) Ian C. McDowell et al.   PLoS One

Shifting the paradigm from pathogens to pathobiome: new concepts in the light of meta-omics

(2014) Muriel Vayssier-Taussat et al.   Frontiers in Cellular and Infection Microbiology

Quantifying crypticSymbiodiniumdiversity withinOrbicella faveolataandOrbicella franksiat the Flower Garden Banks, Gulf of Mexico

(2014) Elizabeth A. Green et al.   PeerJ

Bacterial profiling of White Plague Disease across corals and oceans indicates a conserved and distinct disease microbiome

(2013) Cornelia Roder et al.   MOLECULAR ECOLOGY

No Control Genes Required: Bayesian Analysis of qRT-PCR Data

(2013) Mikhail V. Matz et al.   PLoS One

Effects of cold stress and heat stress on coral fluorescence in reef-building corals

(2013) Melissa S. Roth et al.   Scientific Reports

Caribbean coral diseases: primary transmission or secondary infection?

(2012) Erinn M. Muller et al.   GLOBAL CHANGE BIOLOGY

Whole Transcriptome Analysis of the CoralAcropora milleporaReveals Complex Responses to CO2-driven Acidification during the Initiation of Calcification

(2012) A. MOYA et al.   MOLECULAR ECOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

The Role of Coral-Associated Bacterial Communities in Australian Subtropical White Syndrome of Turbinaria mesenterina

(2012) Scott Godwin et al.   PLoS One

Vibrio owensii Induces the Tissue Loss Disease Montipora White Syndrome in the Hawaiian Reef Coral Montipora capitata

(2012) Blake Ushijima et al.   PLoS One

Physiological responses of the scleractinian coral Pocillopora damicornis to bacterial stress from Vibrio coralliilyticus

(2011) J. Vidal-Dupiol et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Patterns of coral ecological immunology: variation in the responses of Caribbean corals to elevated temperature and a pathogen elicitor

(2011) C. V. Palmer et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Antibacterial Activity of Marine and Black Band Disease Cyanobacteria against Coral-Associated Bacteria

(2011) Miroslav Gantar et al.   Marine Drugs

Environmental Factors Controlling the Distribution of Symbiodinium Harboured by the Coral Acropora millepora on the Great Barrier Reef

(2011) Timothy F. Cooper et al.   PLoS One

Development of Gene Expression Markers of Acute Heat-Light Stress in Reef-Building Corals of the Genus Porites

(2011) Carly D. Kenkel et al.   PLoS One

The Urgent Need for Robust Coral Disease Diagnostics

(2011) F. Joseph Pollock et al.   PLoS Pathogens

Vibrio infections triggering mass mortality events in a warming Mediterranean Sea

(2010) Luigi Vezzulli et al.   ENVIRONMENTAL MICROBIOLOGY

UniFrac: an effective distance metric for microbial community comparison

(2010) Catherine Lozupone et al.   ISME Journal

Protein expression and genetic structure of the coralPorites lobatain an environmentally extreme Samoan back reef: does host genotype limit phenotypic plasticity?

(2010) D. J. BARSHIS et al.   MOLECULAR ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Immune defenses of healthy, bleached and diseased Montastraea faveolata during a natural bleaching event

(2009) LD Mydlarz et al.   DISEASES OF AQUATIC ORGANISMS

Vibrio owensii sp. nov., isolated from cultured crustaceans in Australia

(2009) Ana Cano-Gómez et al.   FEMS MICROBIOLOGY LETTERS

Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata

(2009) Shinichi Sunagawa et al.   ISME Journal

How feasible is the biological control of coral diseases?

(2009) Max Teplitski et al.   TRENDS IN ECOLOGY & EVOLUTION

arrayQualityMetrics—a bioconductor package for quality assessment of microarray data

(2008) Audrey Kauffmann et al.   BIOINFORMATICS

TheVibriocore group induces yellow band disease in Caribbean and Indo-Pacific reef-building corals

(2008) J.M. Cervino et al.   JOURNAL OF APPLIED MICROBIOLOGY

Antimicrobial and Cytotoxic Assessment of Marine Cyanobacteria - Synechocystis and Synechococcus

(2008) Rosário Martins et al.   Marine Drugs

Differential gene expression during thermal stress and bleaching in the Caribbean coralMontastraea faveolata

(2008) M. K. DESALVO et al.   MOLECULAR ECOLOGY

Coral Pathogens Identified for White Syndrome (WS) Epizootics in the Indo-Pacific

(2008) Meir Sussman et al.   PLoS One

Natural Disease Resistance in Threatened Staghorn Corals

(2008) Steven V. Vollmer et al.   PLoS One