Dynamics of bacterial community succession in a salt marsh chronosequence: evidences for temporal niche partitioning

Temporal variability in soil microbial communities across land-use types

(2013) Christian L Lauber et al.   ISME Journal

Changes in assembly processes in soil bacterial communities following a wildfire disturbance

(2013) Scott Ferrenberg et al.   ISME Journal

Ecosystem assembly rules: the interplay of green and brown webs during salt marsh succession

(2012) Maarten Schrama et al.   ECOLOGY

Phylogenetic diversity and the functioning of ecosystems

(2012) Diane S. Srivastava et al.   ECOLOGY LETTERS

The dissimilarity of species interaction networks

(2012) Timothée Poisot et al.   ECOLOGY LETTERS

Bacterial diversity in the foreland of the Tianshan No. 1 glacier, China

(2012) Xiukun Wu et al.   Environmental Research Letters

Salt marsh sediment diversity: a test of the variability of the rare biosphere among environmental replicates

(2012) Jennifer L Bowen et al.   ISME Journal

Spatial and Temporal Variation of Archaeal, Bacterial and Fungal Communities in Agricultural Soils

(2012) Michele C. Pereira e Silva et al.   PLoS One

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

Global Biogeography and Quantitative Seasonal Dynamics of Gemmatimonadetes in Soil

(2011) Jennifer M. DeBruyn et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

Analysis of bacterial and archaeal diversity in coastal microbial mats using massive parallel 16S rRNA gene tag sequencing

(2011) Henk Bolhuis et al.   ISME Journal

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Coherent dynamics and association networks among lake bacterioplankton taxa

(2011) Alexander Eiler et al.   ISME Journal

Do Patterns of Bacterial Diversity along Salinity Gradients Differ from Those Observed for Macroorganisms?

(2011) Jianjun Wang et al.   PLoS One

Drivers of bacterial  -diversity depend on spatial scale

(2011) J. B. H. Martiny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Methane uptake in salt-affected soils shows low sensitivity to salt addition

(2011) Jinfeng Zhang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Network analysis in conservation biogeography: challenges and opportunities

(2010) Graeme S. Cumming et al.   DIVERSITY AND DISTRIBUTIONS

A global network of coexisting microbes from environmental and whole-genome sequence data

(2010) S. Chaffron et al.   GENOME RESEARCH

Nitrogen and phosphorus enrichment alter the composition of ammonia-oxidizing bacteria in salt marsh sediments

(2010) Melissa D Lage et al.   ISME Journal

Microbial secondary succession in a chronosequence of chalk grasslands

(2010) Eiko E Kuramae et al.   ISME Journal

Abundances and potential activities of nitrogen cycling microbial communities along a chronosequence of a glacier forefield

(2010) Robert Brankatschk et al.   ISME Journal

Examining the global distribution of dominant archaeal populations in soil

(2010) Scott T Bates et al.   ISME Journal

The use of chronosequences in studies of ecological succession and soil development

(2010) Lawrence R. Walker et al.   JOURNAL OF ECOLOGY

Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions

(2010) Jens Reeder et al.   NATURE METHODS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The ecological coherence of high bacterial taxonomic ranks

(2010) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Changes through time: integrating microorganisms into the study of succession

(2010) Noah Fierer et al.   RESEARCH IN MICROBIOLOGY

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Salt marsh sediment bacteria: their distribution and response to external nutrient inputs

(2009) Jennifer L Bowen et al.   ISME Journal

Bacterial succession in a glacier foreland of the High Arctic

(2009) Ursel M E Schütte et al.   ISME Journal

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Testing the assumptions of chronosequences in succession

(2008) Edward A. Johnson et al.   ECOLOGY LETTERS

The earliest stages of ecosystem succession in high-elevation (5000 metres above sea level), recently deglaciated soils

(2008) S.K Schmidt et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES