Comparative genomics explains the evolutionary success of reef-forming corals

Transcriptome Analysis of the Circadian Regulatory Network in the Coral Acropora millepora

(2016) Peter D. Vize   BIOLOGICAL BULLETIN

Two-pore channel 1 interacts with citron kinase, regulating completion of cytokinesis

(2015) Jaime S Horton et al.   Channels

Evidence of ancient genome reduction in red algae (Rhodophyta)

(2015) Huan Qiu et al.   JOURNAL OF PHYCOLOGY

Receptor for protons: First observations on Acid Sensing Ion Channels

(2015) Oleg Krishtal   NEUROPHARMACOLOGY

Bicarbonate transporters in corals point towards a key step in the evolution of cnidarian calcification

(2015) Didier Zoccola et al.   Scientific Reports

Why don't plants have diabetes? Systems for scavenging reactive carbonyls in photosynthetic organisms: Figure 1

(2014) Ginga Shimakawa et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Shaping the microenvironment: evidence for the influence of a host galaxin on symbiont acquisition and maintenance in the squid-vibrio symbiosis

(2014) Elizabeth A. C. Heath-Heckman et al.   ENVIRONMENTAL MICROBIOLOGY

The Evolution of the Four Subunits of Voltage-Gated Calcium Channels: Ancient Roots, Increasing Complexity, and Multiple Losses

(2014) Yehu Moran et al.   Genome Biology and Evolution

Microbiota of the Major South Atlantic Reef Building Coral Mussismilia

(2014) Samodha C. Fernando et al.   MICROBIAL ECOLOGY

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Calvin Cycle Inevitably Produces Sugar-Derived Reactive Carbonyl Methylglyoxal During Photosynthesis: A Potential Cause of Plant Diabetes

(2014) Daisuke Takagi et al.   PLANT AND CELL PHYSIOLOGY

Immunolocalization of skeletal matrix proteins in tissue and mineral of the coral Stylophora pistillata

(2014) T. Mass et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of TNF-induced apoptosis reveals 550 My of functional conservation

(2014) Steven D. Quistad et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Corals concentrate dissolved inorganic carbon to facilitate calcification

(2014) Nicola Allison et al.   Nature Communications

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing

(2014) Patrick J. Keeling et al.   PLOS BIOLOGY

The evolution and future of carbonate precipitation in marine invertebrates: Witnessing extinction or documenting resilience in the Anthropocene?

(2014) Jeana L. Drake et al.   Elementa-Science of the Anthropocene

Integrating microRNA and mRNA expression profiling in Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals

(2013) Sebastian Baumgarten et al.   BMC GENOMICS

Cloning and Characterization of Four Novel Coral Acid-Rich Proteins that Precipitate Carbonates In Vitro

(2013) Tali Mass et al.   CURRENT BIOLOGY

Draft Assembly of the Symbiodinium minutum Nuclear Genome Reveals Dinoflagellate Gene Structure

(2013) Eiichi Shoguchi et al.   CURRENT BIOLOGY

The Genome of the Foraminiferan Reticulomyxa filosa

(2013) Gernot Glöckner et al.   CURRENT BIOLOGY

Nitric oxide mediates coral bleaching through an apoptotic-like cell death pathway: evidence from a model sea anemone-dinoflagellate symbiosis

(2013) Thomas D. Hawkins et al.   FASEB JOURNAL

The Skeletal Proteome of the Coral Acropora millepora: The Evolution of Calcification by Co-Option and Domain Shuffling

(2013) Paula Ramos-Silva et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ultrafast Approximation for Phylogenetic Bootstrap

(2013) B. Q. Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Pan genome of the phytoplankton Emiliania underpins its global distribution

(2013) Betsy A. Read et al.   NATURE

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Functional Analysis of Casein Kinase 1 in a Minimal Circadian System

(2013) Gerben van Ooijen et al.   PLoS One

Proteomic analysis of skeletal organic matrix from the stony coral Stylophora pistillata

(2013) J. L. Drake et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Marine Ecosystem Responses to Cenozoic Global Change

(2013) R. D. Norris et al.   SCIENCE

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Carbonic anhydrases in anthozoan corals—A review

(2012) Anthony Bertucci et al.   BIOORGANIC & MEDICINAL CHEMISTRY

TPC Proteins Are Phosphoinositide- Activated Sodium-Selective Ion Channels in Endosomes and Lysosomes

(2012) Xiang Wang et al.   CELL

Marked changes in neuropeptide expression accompany broadcast spawnings in the gastropod Haliotis asinina

(2012) Patrick S York et al.   Frontiers in Zoology

Cell Biology of Cnidarian-Dinoflagellate Symbiosis

(2012) S. K. Davy et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs

(2012) Bruce A. Curtis et al.   NATURE

Mitochondrial pathway of apoptosis is ancestral in metazoans

(2012) C. E. Bender et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cyanophora paradoxa Genome Elucidates Origin of Photosynthesis in Algae and Plants

(2012) D. C. Price et al.   SCIENCE

Draft genome sequence and genetic transformation of the oleaginous alga Nannochloropsis gaditana

(2012) Randor Radakovits et al.   Nature Communications

Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage

(2012) Hervé Moreau et al.   GENOME BIOLOGY

The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation

(2012) Guillaume Blanc et al.   GENOME BIOLOGY

The public goods hypothesis for the evolution of life on Earth

(2011) James O McInerney et al.   Biology Direct

The ancient evolutionary origins of Scleractinia revealed by azooxanthellate corals

(2011) Jarosław Stolarski et al.   BMC EVOLUTIONARY BIOLOGY

The biology of coral metamorphosis: Molecular responses of larvae to inducers of settlement and metamorphosis

(2011) L.C. Grasso et al.   DEVELOPMENTAL BIOLOGY

Using the Acropora digitifera genome to understand coral responses to environmental change

(2011) Chuya Shinzato et al.   NATURE

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

(2011) K. D. Pruitt et al.   NUCLEIC ACIDS RESEARCH

Live Tissue Imaging Shows Reef Corals Elevate pH under Their Calcifying Tissue Relative to Seawater

(2011) Alexander Venn et al.   PLoS One

Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics

(2011) C. J. Gobler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Complex Diel Cycles of Gene Expression in Coral-Algal Symbiosis

(2011) O. Levy et al.   SCIENCE

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

The role of collagen in bone apatite formation in the presence of hydroxyapatite nucleation inhibitors

(2010) Fabio Nudelman et al.   NATURE MATERIALS

TheChlorella variabilisNC64A Genome Reveals Adaptation to Photosymbiosis, Coevolution with Viruses, and Cryptic Sex

(2010) Guillaume Blanc et al.   PLANT CELL

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

New tricks with old genes: the genetic bases of novel cnidarian traits

(2010) Sylvain Forêt et al.   TRENDS IN GENETICS

Biomineralization in Humans: Making the Hard Choices in Life

(2009) Kazuhiko Kawasaki et al.   Annual Review of Genetics

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Differential expression of three galaxin-related genes during settlement and metamorphosis in the scleractinian coral Acropora millepora

(2009) Alejandro Reyes-Bermudez et al.   BMC EVOLUTIONARY BIOLOGY

Parallel Evolution of Nacre Building Gene Sets in Molluscs

(2009) Daniel J. Jackson et al.   MOLECULAR BIOLOGY AND EVOLUTION

InParanoid 7: new algorithms and tools for eukaryotic orthology analysis

(2009) G. Ostlund et al.   NUCLEIC ACIDS RESEARCH

Effects of solar ultraviolet radiation on coral reef organisms

(2009) Anastazia T. Banaszak et al.   PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES

Imaging intracellular pH in a reef coral and symbiotic anemone

(2009) A. A. Venn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas

(2009) A. Z. Worden et al.   SCIENCE

Evolution of collagen-based adhesion systems

(2008) Jyrki Heino et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY