The complete plastome of macaw palm [Acrocomia aculeata (Jacq.) Lodd. ex Mart.] and extensive molecular analyses of the evolution of plastid genes in Arecaceae

Plastid transformation and its application in metabolic engineering

(2018) Paulina Fuentes et al.   CURRENT OPINION IN BIOTECHNOLOGY

Contrasting Patterns of Nucleotide Substitution Rates Provide Insight into Dynamic Evolution of Plastid and Mitochondrial Genomes of Geranium

(2017) Seongjun Park et al.   Genome Biology and Evolution

Endemic palm species shed light on habitat shifts and the assembly of the Cerrado and Restinga floras

(2017) Christine D. Bacon et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The Linum usitatissimum L. plastome reveals atypical structural evolution, new editing sites, and the phylogenetic position of Linaceae within Malpighiales

(2017) Amanda de Santana Lopes et al.   PLANT CELL REPORTS

One-third of the plastid genes evolved under positive selection in PACMAD grasses

(2017) Anthony Piot et al.   PLANTA

Next-Generation Insect-Resistant Plants: RNAi-Mediated Crop Protection

(2017) Jiang Zhang et al.   TRENDS IN BIOTECHNOLOGY

A new species of Acrocomia (Arecaceae) from Central Brazil

(2017) SUELEN ALVES VIANNA   Phytotaxa

Whole plastid transcriptomes reveal abundant RNA editing sites and differential editing status in Phalaenopsis aphrodite subsp. formosana

(2017) Ting-Chieh Chen et al.   Botanical Studies

Chloroplast NDH: A different enzyme with a structure similar to that of respiratory NADH dehydrogenase

(2016) Toshiharu Shikanai   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Frequent chloroplast RNA editing in early-branching flowering plants: pilot studies on angiosperm-wide coexistence of editing sites and their nuclear specificity factors

(2016) Anke Hein et al.   BMC EVOLUTIONARY BIOLOGY

Abundant RNA editing sites of chloroplast protein-coding genes in Ginkgo biloba and an evolutionary pattern analysis

(2016) Peng He et al.   BMC PLANT BIOLOGY

Breeding of Acrocomia aculeata using genetic diversity parameters and correlations to select accessions based on vegetative, phenological, and reproductive characteristics

(2016) S.M. Coser et al.   GENETICS AND MOLECULAR RESEARCH

Plastid–Nuclear Interaction and Accelerated Coevolution in Plastid Ribosomal Genes in Geraniaceae

(2016) Mao-Lun Weng et al.   Genome Biology and Evolution

Initial development of seedlings of macauba palm (Acrocomia aculeata)

(2016) Wesley Machado et al.   INDUSTRIAL CROPS AND PRODUCTS

Mating System and Genetic Composition of the Macaw Palm (Acrocomia aculeata): Implications for Breeding and Genetic Conservation Programs

(2016) Éder C. M. Lanes et al.   JOURNAL OF HEREDITY

An all-evidence species-level supertree for the palms (Arecaceae)

(2016) Søren Faurby et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Fruit development, growth, and stored reserves in macauba palm (Acrocomia aculeata), an alternative bioenergy crop

(2016) Sebastián Giraldo Montoya et al.   PLANTA

The plastome sequence of the endemic Amazonian conifer, Retrophyllum piresii (Silba) C.N.Page, reveals different recombination events and plastome isoforms

(2016) Leila do Nascimento Vieira et al.   Tree Genetics & Genomes

Insights into the Genetic Relationships and Breeding Patterns of the African Tea Germplasm Based on nSSR Markers and cpDNA Sequences

(2016) Moses C. Wambulwa et al.   Frontiers in Plant Science

Nuclear and Chloroplast DNA Variation Provides Insights into Population Structure and Multiple Origin of Native Aromatic Rices of Odisha, India

(2016) Pritesh Sundar Roy et al.   PLoS One

Somatic embryogenesis in Acrocomia aculeata Jacq. (Lodd.) ex Mart using the thin cell layer technique

(2015) João Henrique Delfrate Padilha et al.   Acta Botanica Brasilica

Resolving relationships within the palm subfamily Arecoideae (Arecaceae) using plastid sequences derived from next-generation sequencing

(2015) J. R. Comer et al.   AMERICAN JOURNAL OF BOTANY

Plastome organization and evolution of chloroplast genes in Cardamine species adapted to contrasting habitats

(2015) Shiliang Hu et al.   BMC GENOMICS

Biogeography of the Phalaenopsis amabilis species complex inferred from nuclear and plastid DNAs

(2015) Chi-Chu Tsai et al.   BMC PLANT BIOLOGY

Phylogenetic inference and SSR characterization of tropical woody bamboos tribe Bambuseae (Poaceae: Bambusoideae) based on complete plastid genome sequences

(2015) Leila do Nascimento Vieira et al.   CURRENT GENETICS

Dynamics of chloroplast genomes in green plants

(2015) Jian-Hong Xu et al.   GENOMICS

Evolutionary dynamics of the plastid inverted repeat: the effects of expansion, contraction, and loss on substitution rates

(2015) Andan Zhu et al.   NEW PHYTOLOGIST

Plastid genomes reveal support for deep phylogenetic relationships and extensive rate variation among palms and other commelinid monocots

(2015) Craig F. Barrett et al.   NEW PHYTOLOGIST

Cross-species amplification and characterization of new microsatellite markers for the macaw palm, Acrocomia aculeata (Arecaceae)

(2015) Fekadu Gebretensay Mengistu et al.   Plant Genetic Resources-Characterization and Utilization

Convergent Evolution towards High Net Carbon Gain Efficiency Contributes to the Shade Tolerance of Palms (Arecaceae)

(2015) Ren-Yi Ma et al.   PLoS One

The Complete Sequence of the Acacia ligulata Chloroplast Genome Reveals a Highly Divergent clpP1 Gene

(2015) Anna V. Williams et al.   PLoS One

Plastid genomics in horticultural species: importance and applications for plant population genetics, evolution, and biotechnology

(2015) Marcelo Rogalski et al.   Frontiers in Plant Science

Cross-species amplification and characterization of new microsatellite markers for the macaw palm, Acrocomia aculeata (Arecaceae)

(2015) Fekadu Gebretensay Mengistu et al.   Plant Genetic Resources-Characterization and Utilization

Molecular Characterization and Population Structure of the Macaw Palm, Acrocomia aculeata (Arecaceae), Ex Situ Germplasm Collection Using Microsatellites Markers

(2014) E. C. M. Lanes et al.   JOURNAL OF HEREDITY

Brazil promotes aviation biofuels

(2014) Éder Cristian Malta de Lanes et al.   NATURE

An improved protocol for somatic embryogenesis and plant regeneration in macaw palm (Acrocomia aculeata) from mature zygotic embryos

(2014) Zanderluce Gomes Luis et al.   PLANT CELL TISSUE AND ORGAN CULTURE

An Improved Protocol for Intact Chloroplasts and cpDNA Isolation in Conifers

(2014) Leila do Nascimento Vieira et al.   PLoS One

A Review of the Prevalence, Utility, and Caveats of Using Chloroplast Simple Sequence Repeats for Studies of Plant Biology

(2014) Gregory L. Wheeler et al.   Applications in Plant Sciences

RNA Editing in Plants and Its Evolution

(2013) Mizuki Takenaka et al.   Annual Review of Genetics

Ethanol production from macaúba ( Acrocomia aculeata ) presscake hemicellulosic hydrolysate by Candida boidinii UFMG14

(2013) D.B. Gonçalves et al.   BIORESOURCE TECHNOLOGY

Seed germination and estimates of genetic parameters of promising macaw palm (Acrocomia aculeata) progenies for biofuel production

(2013) Luiz Henrique Chorfi Berton et al.   INDUSTRIAL CROPS AND PRODUCTS

Biometry and oil contents of Acrocomia aculeata fruits from the Cerrados and Pantanal biomes in Mato Grosso do Sul, Brazil

(2013) Gabrielly Ciconini et al.   INDUSTRIAL CROPS AND PRODUCTS

The Uneven Rate of the Molecular Evolution of Gene Sequences of DNA-Dependent RNA Polymerase I of the Genus Lamium L.

(2013) Katarzyna Krawczyk et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Reconstruction of the Ancestral Plastid Genome in Geraniaceae Reveals a Correlation between Genome Rearrangements, Repeats, and Nucleotide Substitution Rates

(2013) Mao-Lun Weng et al.   MOLECULAR BIOLOGY AND EVOLUTION

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

(2013) Marc Lohse et al.   NUCLEIC ACIDS RESEARCH

Differential regulation of Arabidopsis plastid gene expression and RNA editing in non-photosynthetic tissues

(2013) Ching-Chih Tseng et al.   PLANT MOLECULAR BIOLOGY

Complete Plastid Genome Sequencing of Trochodendraceae Reveals a Significant Expansion of the Inverted Repeat and Suggests a Paleogene Divergence between the Two Extant Species

(2013) Yan-xia Sun et al.   PLoS One

Complete Sequence and Comparative Analysis of the Chloroplast Genome of Coconut Palm (Cocos nucifera)

(2013) Ya-Yi Huang et al.   PLoS One

Molecular evolution of psbA gene in ferns: unraveling selective pressure and co-evolutionary pattern

(2012) Lin Sen et al.   BMC EVOLUTIONARY BIOLOGY

Characterization of the chloroplast genome sequence of oil palm (Elaeis guineensis Jacq.)

(2012) P. Uthaipaisanwong et al.   GENE

Ecophysiological traits of the macaw palm: A contribution towards the domestication of a novel oil crop

(2012) Thiago Pereira Pires et al.   INDUSTRIAL CROPS AND PRODUCTS

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

The Contributions of Wobbling and Superwobbling to the Reading of the Genetic Code

(2012) Sibah Alkatib et al.   PLoS Genetics

Twenty-five years of progress in understanding pollination mechanisms in palms (Arecaceae)

(2011) Anders S. Barfod et al.   ANNALS OF BOTANY

Phylogenetic relationships among arecoid palms (Arecaceae: Arecoideae)

(2011) William J. Baker et al.   ANNALS OF BOTANY

Engineering plastid fatty acid biosynthesis to improve food quality and biofuel production in higher plants

(2011) Marcelo Rogalski et al.   PLANT BIOTECHNOLOGY JOURNAL

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

(2011) Susann Wicke et al.   PLANT MOLECULAR BIOLOGY

Extreme Reconfiguration of Plastid Genomes in the Angiosperm Family Geraniaceae: Rearrangements, Repeats, and Codon Usage

(2010) M. M. Guisinger et al.   MOLECULAR BIOLOGY AND EVOLUTION

Plastid ndh genes in plant evolution

(2010) Mercedes Martín et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Chloroplast simple sequence repeats (cpSSRs): technical resources and recommendations for expanding cpSSR discovery and applications to a wide array of plant species

(2009) DANIEL EBERT et al.   Molecular Ecology Resources

The PREP suite: predictive RNA editors for plant mitochondrial genes, chloroplast genes and user-defined alignments

(2009) J. P. Mower   NUCLEIC ACIDS RESEARCH

Complete Generic-Level Phylogenetic Analyses of Palms (Arecaceae) with Comparisons of Supertree and Supermatrix Approaches

(2009) William J. Baker et al.   SYSTEMATIC BIOLOGY

Extensive Rearrangements in the Chloroplast Genome of Trachelium caeruleum Are Associated with Repeats and tRNA Genes

(2008) Rosemarie C. Haberle et al.   JOURNAL OF MOLECULAR EVOLUTION

Extensive Reorganization of the Plastid Genome of Trifolium subterraneum (Fabaceae) Is Associated with Numerous Repeated Sequences and Novel DNA Insertions

(2008) Zhengqiu Cai et al.   JOURNAL OF MOLECULAR EVOLUTION

Rpl33, a Nonessential Plastid-Encoded Ribosomal Protein in Tobacco, Is Required under Cold Stress Conditions

(2008) M. Rogalski et al.   PLANT CELL

Somatic embryogenesis in macaw palm (Acrocomia aculeata) from zygotic embryos

(2008) Elisa Ferreira Moura et al.   SCIENTIA HORTICULTURAE

Development and characterization of microsatellites markers from the macaw

(2007) S. M. NUCCI et al.   Molecular Ecology Resources