The Linum usitatissimum L. plastome reveals atypical structural evolution, new editing sites, and the phylogenetic position of Linaceae within Malpighiales

The Chloroplast Genome of Passiflora edulis (Passifloraceae) Assembled from Long Sequence Reads: Structural Organization and Phylogenomic Studies in Malpighiales

(2017) Luiz A. Cauz-Santos et al.   Frontiers in Plant Science

The plastome sequence of the endemic Amazonian conifer, Retrophyllum piresii (Silba) C.N.Page, reveals different recombination events and plastome isoforms

(2016) Leila do Nascimento Vieira et al.   Tree Genetics & Genomes

Engineering Plastid Genomes: Methods, Tools, and Applications in Basic Research and Biotechnology

(2015) Ralph Bock   Annual Review of Plant Biology

The TIC complex uncovered: The alternative view on the molecular mechanism of protein translocation across the inner envelope membrane of chloroplasts

(2015) Masato Nakai   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Phylogenetic inference and SSR characterization of tropical woody bamboos tribe Bambuseae (Poaceae: Bambusoideae) based on complete plastid genome sequences

(2015) Leila do Nascimento Vieira et al.   CURRENT GENETICS

Dynamics of chloroplast genomes in green plants

(2015) Jian-Hong Xu et al.   GENOMICS

Evolutionary dynamics of the plastid inverted repeat: the effects of expansion, contraction, and loss on substitution rates

(2015) Andan Zhu et al.   NEW PHYTOLOGIST

High-throughput multiplex cpDNA resequencing clarifies the genetic diversity and genetic relationships among Brassica napus , Brassica rapa and Brassica oleracea

(2015) Jiangwei Qiao et al.   PLANT BIOTECHNOLOGY JOURNAL

YCF1: A Green TIC?

(2015) Jan de Vries et al.   PLANT CELL

Plastid genomics in horticultural species: importance and applications for plant population genetics, evolution, and biotechnology

(2015) Marcelo Rogalski et al.   Frontiers in Plant Science

The first complete chloroplast genome sequence from Violaceae (Viola seoulensis)

(2015) Kyeong-Sik Cheon et al.   Mitochondrial DNA Part A

Analysis of the Complete Chloroplast Genome of a Medicinal Plant, Dianthus superbus var. longicalyncinus, from a Comparative Genomics Perspective

(2015) Gurusamy Raman et al.   PLoS One

Evolutionary origin of highly repetitive plastid genomes within the clover genus (Trifolium)

(2014) Saemundur Sveinsson et al.   BMC EVOLUTIONARY BIOLOGY

The whole chloroplast genome of shrub willows (Salix suchowensis)

(2014) Zhiqiang Wu   Mitochondrial DNA

The complete plastid genome sequence ofEustrephus latifolius(Asparagaceae: Lomandroideae)

(2014) Hyoung Tae Kim et al.   Mitochondrial DNA

Genome skimming by shotgun sequencing helps resolve the phylogeny of a pantropical tree family

(2014) Pierre-Jean G. Malé et al.   Molecular Ecology Resources

The Complete Chloroplast Genome Sequence of Podocarpus lambertii: Genome Structure, Evolutionary Aspects, Gene Content and SSR Detection

(2014) Leila do Nascimento Vieira et al.   PLoS One

An Improved Protocol for Intact Chloroplasts and cpDNA Isolation in Conifers

(2014) Leila do Nascimento Vieira et al.   PLoS One

Comparative Chloroplast Genomes of Photosynthetic Orchids: Insights into Evolution of the Orchidaceae and Development of Molecular Markers for Phylogenetic Applications

(2014) Jing Luo et al.   PLoS One

RNA Editing in Plants and Its Evolution

(2013) Mizuki Takenaka et al.   Annual Review of Genetics

The complete chloroplast genome sequence of Mahonia bealei (Berberidaceae) reveals a significant expansion of the inverted repeat and phylogenetic relationship with other angiosperms

(2013) Ji Ma et al.   GENE

Reconstruction of the Ancestral Plastid Genome in Geraniaceae Reveals a Correlation between Genome Rearrangements, Repeats, and Nucleotide Substitution Rates

(2013) Mao-Lun Weng et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

A recurring syndrome of accelerated plastid genome evolution in the angiosperm tribe Sileneae (Caryophyllaceae)

(2013) Daniel B. Sloan et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

(2013) Marc Lohse et al.   NUCLEIC ACIDS RESEARCH

Complete Plastid Genome Sequencing of Trochodendraceae Reveals a Significant Expansion of the Inverted Repeat and Suggests a Paleogene Divergence between the Two Extant Species

(2013) Yan-xia Sun et al.   PLoS One

Complete Sequence and Comparative Analysis of the Chloroplast Genome of Coconut Palm (Cocos nucifera)

(2013) Ya-Yi Huang et al.   PLoS One

Uncovering the Protein Translocon at the Chloroplast Inner Envelope Membrane

(2013) S. Kikuchi et al.   SCIENCE

Recent Acceleration of Plastid Sequence and Structural Evolution Coincides with Extreme Mitochondrial Divergence in the Angiosperm Genus Silene

(2012) Daniel B. Sloan et al.   Genome Biology and Evolution

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenomics and a posteriori data partitioning resolve the Cretaceous angiosperm radiation Malpighiales

(2012) Z. Xi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Historical effects on beta diversity and community assembly in Amazonian trees

(2012) K. G. Dexter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Complete plastid genome sequence of Vaccinium macrocarpon: structure, gene content, and rearrangements revealed by next generation sequencing

(2012) Diego Fajardo et al.   Tree Genetics & Genomes

The Contributions of Wobbling and Superwobbling to the Reading of the Genetic Code

(2012) Sibah Alkatib et al.   PLoS Genetics

Progenitor–derivative speciation in Pozoa (Apiaceae, Azorelloideae) of the southern Andes

(2011) Patricio López et al.   ANNALS OF BOTANY

Genomic profiling of plastid DNA variation in the Mediterranean olive tree

(2011) Guillaume Besnard et al.   BMC PLANT BIOLOGY

Flaxseed: A Potential Source of Food, Feed and Fiber

(2011) K. K. Singh et al.   CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION

Characterization of the complete chloroplast genome of Hevea brasiliensis reveals genome rearrangement, RNA editing sites and phylogenetic relationships

(2011) Sithichoke Tangphatsornruang et al.   GENE

The Effect of a Flaxseed Oil-Enhanced Diet on the Product Quality of Farmed Brook Trout (Salvelinus fontinalis) Fillets

(2011) Courtney A Simmons et al.   JOURNAL OF FOOD SCIENCE

Engineering plastid fatty acid biosynthesis to improve food quality and biofuel production in higher plants

(2011) Marcelo Rogalski et al.   PLANT BIOTECHNOLOGY JOURNAL

Nonessential Plastid-Encoded Ribosomal Proteins in Tobacco: A Developmental Role for Plastid Translation and Implications for Reductive Genome Evolution

(2011) Tobias T. Fleischmann et al.   PLANT CELL

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

(2011) Susann Wicke et al.   PLANT MOLECULAR BIOLOGY

Castor Bean Organelle Genome Sequencing and Worldwide Genetic Diversity Analysis

(2011) Maximo Rivarola et al.   PLoS One

SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information

(2010) Gaurav Vaidya et al.   CLADISTICS

Flaxseed Lignans: Source, Biosynthesis, Metabolism, Antioxidant Activity, Bio-Active Components, and Health Benefits

(2010) Alhassane Touré et al.   COMPREHENSIVE REVIEWS IN FOOD SCIENCE AND FOOD SAFETY

Complete Plastid Genome Sequences of Three Rosids (Castanea, Prunus, Theobroma): Evidence for At Least Two Independent Transfers of rpl22 to the Nucleus

(2010) R. K. Jansen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Extreme Reconfiguration of Plastid Genomes in the Angiosperm Family Geraniaceae: Rearrangements, Repeats, and Codon Usage

(2010) M. M. Guisinger et al.   MOLECULAR BIOLOGY AND EVOLUTION

Complete sequence and organisation of the Jatropha curcas (Euphorbiaceae) chloroplast genome

(2010) Mehar H. Asif et al.   Tree Genetics & Genomes

Malpighiales phylogenetics: Gaining ground on one of the most recalcitrant clades in the angiosperm tree of life

(2009) Kenneth J. Wurdack et al.   AMERICAN JOURNAL OF BOTANY

Plant oils as feedstock alternatives to petroleum – A short survey of potential oil crop platforms

(2009) Anders S. Carlsson   BIOCHIMIE

Characterization of microsatellites and gene contents from genome shotgun sequences of mungbean (Vigna radiata (L.) Wilczek)

(2009) Sithichoke Tangphatsornruang et al.   BMC PLANT BIOLOGY

Loss of all plastid ndh genes in Gnetales and conifers: extent and evolutionary significance for the seed plant phylogeny

(2009) Thomas Werner Anthony Braukmann et al.   CURRENT GENETICS

The PREP suite: predictive RNA editors for plant mitochondrial genes, chloroplast genes and user-defined alignments

(2009) J. P. Mower   NUCLEIC ACIDS RESEARCH

30,000-Year-Old Wild Flax Fibers

(2009) E. Kvavadze et al.   SCIENCE

The Phylogeny of Linum and Linaceae Subfamily Linoideae, with Implications for Their Systematics, Biogeography, and Evolution of Heterostyly

(2009) Joshua McDill et al.   SYSTEMATIC BOTANY

Comparative chloroplast genomics and phylogenetics of Fagopyrum esculentum ssp. ancestrale – A wild ancestor of cultivated buckwheat

(2008) Maria D Logacheva et al.   BMC PLANT BIOLOGY

Extensive Rearrangements in the Chloroplast Genome of Trachelium caeruleum Are Associated with Repeats and tRNA Genes

(2008) Rosemarie C. Haberle et al.   JOURNAL OF MOLECULAR EVOLUTION

Extensive Reorganization of the Plastid Genome of Trifolium subterraneum (Fabaceae) Is Associated with Numerous Repeated Sequences and Novel DNA Insertions

(2008) Zhengqiu Cai et al.   JOURNAL OF MOLECULAR EVOLUTION

Complete plastid genome sequence of the chickpea (Cicer arietinum) and the phylogenetic distribution of rps12 and clpP intron losses among legumes (Leguminosae)

(2008) Robert K. Jansen et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Whole-Gene Positive Selection, Elevated Synonymous Substitution Rates, Duplication, and Indel Evolution of the Chloroplast clpP1 Gene

(2008) Per Erixon et al.   PLoS One

The complete nucleotide sequence of the cassava (Manihot esculenta) chloroplast genome and the evolution of atpF in Malpighiales: RNA editing and multiple losses of a group II intron

(2008) Henry Daniell et al.   THEORETICAL AND APPLIED GENETICS