Frequent chloroplast RNA editing in early-branching flowering plants: pilot studies on angiosperm-wide coexistence of editing sites and their nuclear specificity factors

A Conserved Glutamate Residue in the C-terminal Deaminase Domain of Pentatricopeptide Repeat Proteins Is Required for RNA Editing Activity

(2015) Michael L. Hayes et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

MEF13 Requires MORF3 and MORF8 for RNA Editing at Eight Targets in Mitochondrial mRNAs in Arabidopsis thaliana

(2015) Franziska Glass et al.   Molecular Plant

Synthesis of phylogeny and taxonomy into a comprehensive tree of life

(2015) Cody E. Hinchliff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Zinc Finger Motif-Containing Protein Is Essential for Chloroplast RNA Editing

(2015) Tao Sun et al.   PLoS Genetics

Variable Frequency of Plastid RNA Editing among Ferns and Repeated Loss of Uridine-to-Cytidine Editing from Vascular Plants

(2015) Wenhu Guo et al.   PLoS One

Pentatricopeptide Repeat Proteins in Plants

(2014) Alice Barkan et al.   Annual Review of Plant Biology

Identification of a pentatricopeptide repeat RNA editing factor inPhyscomitrella patenschloroplasts

(2014) Mizuho Ichinose et al.   FEBS LETTERS

RNA editing in plant mitochondria —Connecting RNA target sequences and acting proteins

(2014) Mizuki Takenaka et al.   MITOCHONDRION

The cytidine deaminase signature HxE(x)nCxxC of DYW1 binds zinc and is necessary for RNA editing ofndhD-1

(2014) Clément Boussardon et al.   NEW PHYTOLOGIST

Small kernel 1encodes a pentatricopeptide repeat protein required for mitochondrialnad7transcript editing and seed development in maize(Zea mays)and rice(Oryza sativa)

(2014) Xiao-Jie Li et al.   PLANT JOURNAL

Chloroplast RNA editing going extreme: more than 3400 events of C-to-U editing in the chloroplast transcriptome of the lycophyteSelaginella uncinata

(2014) Bastian Oldenkott et al.   RNA

RNA Editing in Plants and Its Evolution

(2013) Mizuki Takenaka et al.   Annual Review of Genetics

The “fossilized” mitochondrial genome of Liriodendron tulipifera: ancestral gene content and order, ancestral editing sites, and extraordinarily low mutation rate

(2013) Aaron O Richardson et al.   BMC BIOLOGY

Arabidopsischloroplast quantitative editotype

(2013) Hannes Ruwe et al.   FEBS LETTERS

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Two DYW Subclass PPR Proteins are Involved in RNA Editing of ccmFc and atp9 Transcripts in the Moss Physcomitrella patens: First Complete Set of PPR Editing Factors in Plant Mitochondria

(2013) Mizuho Ichinose et al.   PLANT AND CELL PHYSIOLOGY

A DYW-protein knockout inPhyscomitrellaaffects two closely spaced mitochondrial editing sites and causes a severe developmental phenotype

(2013) Mareike Schallenberg-Rüdinger et al.   PLANT JOURNAL

MEF10 is required for RNA editing at nad2-842 in mitochondria of Arabidopsis thaliana and interacts with MORF8

(2013) Barbara Härtel et al.   PLANT MOLECULAR BIOLOGY

Elucidation of the RNA Recognition Code for Pentatricopeptide Repeat Proteins Involved in Organelle RNA Editing in Plants

(2013) Yusuke Yagi et al.   PLoS One

Improved Computational Target Site Prediction for Pentatricopeptide Repeat RNA Editing Factors

(2013) Mizuki Takenaka et al.   PLoS One

Pentatricopeptide repeat proteins involved in plant organellar RNA editing

(2013) Yusuke Yagi et al.   RNA Biology

Quantitative trait locus mapping identifies REME2, a PPR-DYW protein required for editing of specific C targets in Arabidopsis mitochondria

(2013) Stéphane Bentolila et al.   RNA Biology

Molecular evolution of pentatricopeptide repeat genes reveals truncation in species lacking an editing target and structural domains under distinct selective pressures

(2012) Michael L Hayes et al.   BMC EVOLUTIONARY BIOLOGY

Two Related RNA-editing Proteins Target the Same Sites in Mitochondria ofArabidopsis thaliana

(2012) Daniil Verbitskiy et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Mechanistic Insight into Pentatricopeptide Repeat Proteins as Sequence-Specific RNA-Binding Proteins for Organellar RNAs in Plants

(2012) T. Nakamura et al.   PLANT AND CELL PHYSIOLOGY

RIP1, a member of an Arabidopsis protein family, interacts with the protein RARE1 and broadly affects RNA editing

(2012) S. Bentolila et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multiple organellar RNA editing factor (MORF) family proteins are required for RNA editing in mitochondria and plastids of plants

(2012) M. Takenaka et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The DYW-class PPR protein MEF7 is required for RNA editing at four sites in mitochondria ofArabidopsis thaliana

(2012) Anja Zehrmann et al.   RNA Biology

A Combinatorial Amino Acid Code for RNA Recognition by Pentatricopeptide Repeat Proteins

(2012) Alice Barkan et al.   PLoS Genetics

Extreme RNA Editing in Coding Islands and Abundant Microsatellites in Repeat Sequences of Selaginella moellendorffii Mitochondria: The Root of Frequent Plant mtDNA Recombination in Early Tracheophytes

(2011) Julia Hecht et al.   Genome Biology and Evolution

RNA Editing Sites Exist in Protein-coding Genes in the Chloroplast Genome of Cycas taitungensis

(2011) Haiyan Chen et al.   Journal of Integrative Plant Biology

Pentatricopeptide Repeat Proteins Constrain Genome Evolution in Chloroplasts

(2011) Michael L. Hayes et al.   MOLECULAR BIOLOGY AND EVOLUTION

The evolution of RNA editing and pentatricopeptide repeat genes

(2011) Sota Fujii et al.   NEW PHYTOLOGIST

When you can’t trust the DNA: RNA editing changes transcript sequences

(2010) Volker Knoop   CELLULAR AND MOLECULAR LIFE SCIENCES

RNA editing competence oftrans-factor MEF1 is modulated by ecotype-specific differences but requires the DYW domain

(2010) Anja Zehrmann et al.   FEBS LETTERS

Extensive Loss of RNA Editing Sites in Rapidly Evolving Silene Mitochondrial Genomes: Selection vs. Retroprocessing as the Driving Force

(2010) D. B. Sloan et al.   GENETICS

Editing of accD and ndhF chloroplast transcripts is partially affected in the Arabidopsis vanilla cream1 mutant

(2010) Ching-Chih Tseng et al.   PLANT MOLECULAR BIOLOGY

Natural Variation in Arabidopsis Leads to the Identification of REME1, a Pentatricopeptide Repeat-DYW Protein Controlling the Editing of Mitochondrial Transcripts

(2010) S. Bentolila et al.   PLANT PHYSIOLOGY

Plant RNA editing

(2010) Anne-Laure Chateigner-Boutin et al.   RNA Biology

Introducing the plant RNA editing prediction and analysis computer tool PREPACT and an update on RNA editing site nomenclature

(2009) Henning Lenz et al.   CURRENT GENETICS

RNA editing: only eleven sites are present in the Physcomitrella patens mitochondrial transcriptome and a universal nomenclature proposal

(2009) Mareike Rüdinger et al.   MOLECULAR GENETICS AND GENOMICS

Pentatricopeptide Repeat Proteins with the DYW Motif Have Distinct Molecular Functions in RNA Editing and RNA Cleavage in Arabidopsis Chloroplasts

(2009) K. Okuda et al.   PLANT CELL

A DYW Domain-Containing Pentatricopeptide Repeat Protein Is Required for RNA Editing at Multiple Sites in Mitochondria of Arabidopsis thaliana

(2009) A. Zehrmann et al.   PLANT CELL

A comparative genomics approach identifies a PPR-DYW protein that is essential for C-to-U editing of the Arabidopsis chloroplast accD transcript

(2009) J. C. Robbins et al.   RNA

Cucumber, melon, pumpkin, and squash: Are rules of editing in flowering plants chloroplast genes so well known indeed?

(2008) Magdalena Guzowska-Nowowiejska et al.   GENE

Amino acid sequence variations in Nicotiana CRR4 orthologs determine the species-specific efficiency of RNA editing in plastids

(2008) Kenji Okuda et al.   NUCLEIC ACIDS RESEARCH

Pentatricopeptide repeat proteins: a socket set for organelle gene expression

(2008) C SCHMITZLINNEWEBER et al.   TRENDS IN PLANT SCIENCE