Plastome organization and evolution of chloroplast genes in Cardamine species adapted to contrasting habitats
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Title
Plastome organization and evolution of chloroplast genes in Cardamine species adapted to contrasting habitats
Authors
Keywords
<em class=EmphasisTypeItalic >Cardamine</em>, Molecular adaptation, Large single copy region (LSC), Small single copy region (SSC), Plastomes, Positive selection, Repeats, Codon usage
Journal
BMC GENOMICS
Volume 16, Issue 1, Pages -
Publisher
Springer Nature
Online
2015-04-16
DOI
10.1186/s12864-015-1498-0
References
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Note: Only part of the references are listed.- Stability-activity tradeoffs constrain the adaptive evolution of RubisCO
- (2014) Romain A. Studer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2013) M. Rousseau-Gueutin et al. PLANT PHYSIOLOGY
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- (2013) Jun Qian et al. PLoS One
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- (2013) Yue Liu et al. PLoS One
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- Complete Sequence and Comparative Analysis of the Chloroplast Genome of Coconut Palm (Cocos nucifera)
- (2013) Ya-Yi Huang et al. PLoS One
- Molecular Basis of Age-Dependent Vernalization in Cardamine flexuosa
- (2013) C.-M. Zhou et al. SCIENCE
- Uncovering the Protein Translocon at the Chloroplast Inner Envelope Membrane
- (2013) S. Kikuchi et al. SCIENCE
- SEQuel: improving the accuracy of genome assemblies
- (2012) R. Ronen et al. BIOINFORMATICS
- Molecular evolution of psbA gene in ferns: unraveling selective pressure and co-evolutionary pattern
- (2012) Lin Sen et al. BMC EVOLUTIONARY BIOLOGY
- Rates of evolution in stress-related genes are associated with habitat preference in two Cardamine lineages
- (2012) Lino Ometto et al. BMC EVOLUTIONARY BIOLOGY
- Comparing thousands of circular genomes using the CGView Comparison Tool
- (2012) Jason R Grant et al. BMC GENOMICS
- CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences
- (2012) Chang Liu et al. BMC GENOMICS
- jModelTest 2: more models, new heuristics and parallel computing
- (2012) Diego Darriba et al. NATURE METHODS
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- (2012) Jonathan Romiguier et al. PLoS One
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- (2012) Maxim V. Kapralov et al. PLoS One
- Toward almost closed genomes with GapFiller
- (2012) Marten Boetzer et al. GENOME BIOLOGY
- Molecular evolution of rbcL in three gymnosperm families: identifying adaptive and coevolutionary patterns
- (2011) Lin Sen et al. Biology Direct
- Coevolution of amino acid residues in the key photosynthetic enzyme Rubisco
- (2011) Mingcong Wang et al. BMC EVOLUTIONARY BIOLOGY
- Opera: Reconstructing Optimal Genomic Scaffolds with High-Throughput Paired-End Sequences
- (2011) Song Gao et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Synonymous Codon Usage, GC3, and Evolutionary Patterns Across Plastomes of Three Pooid Model Species: Emerging Grass Genome Models for Monocots
- (2011) Gaurav Sablok et al. MOLECULAR BIOTECHNOLOGY
- Chloroplast genomes of photosynthetic eukaryotes
- (2011) Beverley R. Green PLANT JOURNAL
- Expression of Plastid Genes: Organelle-Specific Elaborations on a Prokaryotic Scaffold
- (2011) A. Barkan PLANT PHYSIOLOGY
- MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
- (2011) Vincent Ranwez et al. PLoS One
- A structural phylogenetic map for chloroplast photosynthesis
- (2011) John F. Allen et al. TRENDS IN PLANT SCIENCE
- Chloroplast genome sequence confirms distinctness of Australian and Asian wild rice
- (2011) Daniel L. E. Waters et al. Ecology and Evolution
- Synonymous but not the same: the causes and consequences of codon bias
- (2010) Joshua B. Plotkin et al. NATURE REVIEWS GENETICS
- The Complete Chloroplast Genome Sequence of Date Palm (Phoenix dactylifera L.)
- (2010) Meng Yang et al. PLoS One
- Cabbage family affairs: the evolutionary history of Brassicaceae
- (2010) Andreas Franzke et al. TRENDS IN PLANT SCIENCE
- Molecular evolution and phylogeny of the angiosperm ycf2 gene
- (2010) Jin-Ling HUANG et al. Journal of Systematics and Evolution
- Biogeography and Phylogeny of Cardamine (Brassicaceae)1
- (2009) Tor Carlsen et al. ANNALS OF THE MISSOURI BOTANICAL GARDEN
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
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- (2009) Claudia Canales et al. JOURNAL OF PLANT RESEARCH
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- (2009) A. B. Feria Bourrellier et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A DNA barcode for land plants
- (2009) et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- GenomeVx: simple web-based creation of editable circular chromosome maps
- (2008) G. C. Conant et al. BIOINFORMATICS
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
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- (2008) F. R. Tabita et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
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