Contrasting Patterns of Nucleotide Substitution Rates Provide Insight into Dynamic Evolution of Plastid and Mitochondrial Genomes of Geranium
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Title
Contrasting Patterns of Nucleotide Substitution Rates Provide Insight into Dynamic Evolution of Plastid and Mitochondrial Genomes of Geranium
Authors
Keywords
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Journal
Genome Biology and Evolution
Volume 9, Issue 6, Pages 1766-1780
Publisher
Oxford University Press (OUP)
Online
2017-07-04
DOI
10.1093/gbe/evx124
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- (2016) John C. Blazier et al. ANNALS OF BOTANY
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- (2016) Kate Rockenbach et al. GENETICS
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- Positive Selection in Rapidly Evolving Plastid–Nuclear Enzyme Complexes
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- Chloroplast Genome Evolution in Actinidiaceae: clpP Loss, Heterogenous Divergence and Phylogenomic Practice
- (2016) Wen-Cai Wang et al. PLoS One
- Divergence of RNA polymerase α subunits in angiosperm plastid genomes is mediated by genomic rearrangement
- (2016) J. Chris Blazier et al. Scientific Reports
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- (2015) Seongjun Park et al. BMC PLANT BIOLOGY
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- Dynamic evolution ofGeraniummitochondrial genomes through multiple horizontal and intracellular gene transfers
- (2015) Seongjun Park et al. NEW PHYTOLOGIST
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- (2015) Jin Zhang et al. PLANT CELL
- Miniaturized mitogenome of the parasitic plantViscum scurruloideumis extremely divergent and dynamic and has lost allnadgenes
- (2015) Elizabeth Skippington et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Evolutionary origin of highly repetitive plastid genomes within the clover genus (Trifolium)
- (2014) Saemundur Sveinsson et al. BMC EVOLUTIONARY BIOLOGY
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- Reconstruction of the Ancestral Plastid Genome in Geraniaceae Reveals a Correlation between Genome Rearrangements, Repeats, and Nucleotide Substitution Rates
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- A recurring syndrome of accelerated plastid genome evolution in the angiosperm tribe Sileneae (Caryophyllaceae)
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- Potential Functional Replacement of the Plastidic Acetyl-CoA Carboxylase Subunit (accD) Gene by Recent Transfers to the Nucleus in Some Angiosperm Lineages
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- (2008) G DROUIN et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- CLB19, a pentatricopeptide repeat protein required for editing ofrpoAandclpPchloroplast transcripts
- (2008) Anne-Laure Chateigner-Boutin et al. PLANT JOURNAL
- Whole-Gene Positive Selection, Elevated Synonymous Substitution Rates, Duplication, and Indel Evolution of the Chloroplast clpP1 Gene
- (2008) Per Erixon et al. PLoS One
- Genome-wide analyses of Geraniaceae plastid DNA reveal unprecedented patterns of increased nucleotide substitutions
- (2008) M. M. Guisinger et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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