Microbial small molecules – weapons of plant subversion

The Soil-Borne Legacy

(2018) Peter A.H.M. Bakker et al.   CELL

MYB72-dependent coumarin exudation shapes root microbiome assembly to promote plant health

(2018) Ioannis A. Stringlis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly

(2018) Kateryna Zhalnina et al.   Nature Microbiology

Plant age and seasonal timing determine endophyte growth and alkaloid biosynthesis

(2017) Benjamin Fuchs et al.   Fungal Ecology

Genome editing in Shiraia bambusicola using CRISPR-Cas9 system

(2017) Huaxiang Deng et al.   JOURNAL OF BIOTECHNOLOGY

Disruption of MiaA provides insights into the regulation of phenazine biosynthesis under suboptimal growth conditions in Pseudomonas chlororaphis 30-84

(2017) Jun Myoung Yu et al.   MICROBIOLOGY-SGM

Fusarium graminearum: pathogen or endophyte of North American grasses?

(2017) Lotus A. Lofgren et al.   NEW PHYTOLOGIST

antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification

(2017) Kai Blin et al.   NUCLEIC ACIDS RESEARCH

Ergot Alkaloids of the Family Clavicipitaceae

(2017) Simona Florea et al.   PHYTOPATHOLOGY

Airborne signals from Trichoderma fungi stimulate iron uptake responses in roots resulting in priming of jasmonic acid-dependent defences in shoots of Arabidopsis thaliana and Solanum lycopersicum

(2017) Ainhoa Martínez-Medina et al.   PLANT CELL AND ENVIRONMENT

The cyclic lipopeptide orfamide induces systemic resistance in rice to Cochliobolus miyabeanus but not to Magnaporthe oryzae

(2017) Zongwang Ma et al.   PLANT CELL REPORTS

Root transcriptional dynamics induced by beneficial rhizobacteria and microbial immune elicitors reveal signatures of adaptation to mutualists

(2017) Ioannis A. Stringlis et al.   PLANT JOURNAL

Genome-wide identification of bacterial plant colonization genes

(2017) Benjamin J. Cole et al.   PLOS BIOLOGY

Gibberellins Producing Endophytic Fungus Porostereum spadiceum AGH786 Rescues Growth of Salt Affected Soybean

(2017) Muhammad Hamayun et al.   Frontiers in Microbiology

Antimicrobial and Insecticidal: Cyclic Lipopeptides and Hydrogen Cyanide Produced by Plant-Beneficial Pseudomonas Strains CHA0, CMR12a, and PCL1391 Contribute to Insect Killing

(2017) Pascale Flury et al.   Frontiers in Microbiology

Plant Phenotypic and Transcriptional Changes Induced by Volatiles from the Fungal Root Pathogen Rhizoctonia solani

(2017) Viviane Cordovez et al.   Frontiers in Plant Science

Improvement of hypocrellin production by a new fungal source and optimization of cultivation conditions

(2016) Xiao-Ye Shen et al.   BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT

Root Endophyte Colletotrichum tofieldiae Confers Plant Fitness Benefits that Are Phosphate Status Dependent

(2016) Kei Hiruma et al.   CELL

Insect pathogenicity in plant-beneficial pseudomonads: phylogenetic distribution and comparative genomics

(2016) Pascale Flury et al.   ISME Journal

Bacterial pathogenesis of plants: future challenges from a microbial perspective

(2016) Sebastian Pfeilmeier et al.   MOLECULAR PLANT PATHOLOGY

Bacteria establish an aqueous living space in plants crucial for virulence

(2016) Xiu-Fang Xin et al.   NATURE

Victoria Blight, defense turned upside down

(2016) Thomas J. Wolpert et al.   PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY

ThePseudomonas fluorescensSiderophore Pyoverdine WeakensArabidopsis thalianaDefense in Favor of Growth in Iron-Deficient Conditions

(2016) Pauline Trapet et al.   PLANT PHYSIOLOGY

The Soil-Borne Supremacy

(2016) Corné M.J. Pieterse et al.   TRENDS IN PLANT SCIENCE

Signaling in the Rhizosphere

(2016) Vittorio Venturi et al.   TRENDS IN PLANT SCIENCE

Role of phenazines and cyclic lipopeptides produced bypseudomonassp. CMR12a in induced systemic resistance on rice and bean

(2016) Zongwang Ma et al.   Environmental Microbiology Reports

Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi

(2016) Stéphane Hacquard et al.   Nature Communications

Cytokinin production by Pseudomonas fluorescens G20-18 determines biocontrol activity against Pseudomonas syringae in Arabidopsis

(2016) Dominik K. Großkinsky et al.   Scientific Reports

Cytokinin Production by the Rice Blast Fungus Is a Pivotal Requirement for Full Virulence

(2016) Emilie Chanclud et al.   PLoS Pathogens

Pectobacterium atrosepticum and Pectobacterium carotovorum Harbor Distinct, Independently Acquired Integrative and Conjugative Elements Encoding Coronafacic Acid that Enhance Virulence on Potato Stems

(2016) Preetinanda Panda et al.   Frontiers in Microbiology

Coronatine Facilitates Pseudomonas syringae Infection of Arabidopsis Leaves at Night

(2016) Shweta Panchal et al.   Frontiers in Plant Science

Indexing the Pseudomonas specialized metabolome enabled the discovery of poaeamide B and the bananamides

(2016) Don D. Nguyen et al.   Nature Microbiology

Promotion of plant growth by Pseudomonas fluorescens strain SS101 via novel volatile organic compounds

(2015) Yong-Soon Park et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Unearthing the genomes of plant-beneficial Pseudomonas model strains WCS358, WCS374 and WCS417

(2015) Roeland L. Berendsen et al.   BMC GENOMICS

Contribution of the non-effector members of the HrpL regulon, iaaL and matE, to the virulence of Pseudomonas syringae pv. tomato DC3000 in tomato plants

(2015) Melissa G. Castillo-Lizardo et al.   BMC MICROBIOLOGY

De novobiosynthesis of cytokinins in the biotrophic fungusClaviceps purpurea

(2015) Janine Hinsch et al.   ENVIRONMENTAL MICROBIOLOGY

Gliotoxin - bane or boon?

(2015) Daniel H. Scharf et al.   ENVIRONMENTAL MICROBIOLOGY

Volatile affairs in microbial interactions

(2015) Ruth Schmidt et al.   ISME Journal

Cross-kingdom similarities in microbiome functions

(2015) Rodrigo Mendes et al.   ISME Journal

Fungal invasion of the rhizosphere microbiome

(2015) Emilie Chapelle et al.   ISME Journal

The nexus between growth and defence signalling: auxin and cytokinin modulate plant immune response pathways

(2015) Muhammad Naseem et al.   JOURNAL OF EXPERIMENTAL BOTANY

New insights into the role of siderophores as triggers of plant immunity: what can we learn from animals?

(2015) A. Aznar et al.   JOURNAL OF EXPERIMENTAL BOTANY

A Century of Gibberellin Research

(2015) Peter Hedden et al.   JOURNAL OF PLANT GROWTH REGULATION

Bacteria and fungi controlling plant growth by manipulating auxin: Balance between development and defense

(2015) Jutta Ludwig-Müller   JOURNAL OF PLANT PHYSIOLOGY

Characterization of the Coronatine-Like Phytotoxins Produced by the Common Scab PathogenStreptomyces scabies

(2015) Joanna K. Fyans et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The Novel Lipopeptide Poaeamide of the EndophytePseudomonas poaeRE*1-1-14 Is Involved in Pathogen Suppression and Root Colonization

(2015) Christin Zachow et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Characterization of Cichopeptins, New Phytotoxic Cyclic Lipodepsipeptides Produced byPseudomonas cichoriiSF1-54 and Their Role in Bacterial Midrib Rot Disease of Lettuce

(2015) Chien-Jui Huang et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Minimum Information about a Biosynthetic Gene cluster

(2015) Marnix H Medema et al.   Nature Chemical Biology

Sequencing and beyond: integrating molecular 'omics' for microbial community profiling

(2015) Eric A. Franzosa et al.   NATURE REVIEWS MICROBIOLOGY

New PKS-NRPS tetramic acids and pyridinone from an Australian marine-derived fungus, Chaunopycnis sp.

(2015) Zhuo Shang et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

Rhizobacterial volatiles and photosynthesis-related signals coordinateMYB72expression in Arabidopsis roots during onset of induced systemic resistance and iron-deficiency responses

(2015) Christos Zamioudis et al.   PLANT JOURNAL

Immunity to plant pathogens and iron homeostasis

(2015) Aude Aznar et al.   PLANT SCIENCE

Production of Siderophores Increases Resistance to Fusaric Acid in Pseudomonas protegens Pf-5

(2015) Jimena A. Ruiz et al.   PLoS One

Roles of Indole as an Interspecies and Interkingdom Signaling Molecule

(2015) Jin-Hyung Lee et al.   TRENDS IN MICROBIOLOGY

Biosynthesis of the mycotoxin tenuazonic acid by a fungal NRPS–PKS hybrid enzyme

(2015) Choong-Soo Yun et al.   Nature Communications

Diversity and functions of volatile organic compounds produced by Streptomyces from a disease-suppressive soil

(2015) Viviane Cordovez et al.   Frontiers in Microbiology

Comparative genomic analysis of multiple strains of two unusual plant pathogens: Pseudomonas corrugata and Pseudomonas mediterranea

(2015) Emmanouil A. Trantas et al.   Frontiers in Microbiology

Current and future resources for functional metagenomics

(2015) Kathy N. Lam et al.   Frontiers in Microbiology

Jasmonate signalling in Arabidopsis involves SGT1b–HSP70–HSP90 chaperone complexes

(2015) Xue-Cheng Zhang et al.   Nature Plants

Fusarium oxysporum Triggers Tissue-Specific Transcriptional Reprogramming in Arabidopsis thaliana

(2015) Rebecca Lyons et al.   PLoS One

Induced Systemic Resistance by Beneficial Microbes

(2014) Corné M.J. Pieterse et al.   Annual Review of Phytopathology

Indole-3-acetic acid in plant–microbe interactions

(2014) Daiana Duca et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Chemosensation of Bacterial Secondary Metabolites Modulates Neuroendocrine Signaling and Behavior of C. elegans

(2014) Joshua D. Meisel et al.   CELL

To settle or to move? The interplay between two classes of cyclic lipopeptides in the biocontrol strainPseudomonas CMR12a

(2014) Jolien D'aes et al.   ENVIRONMENTAL MICROBIOLOGY

New insights into the role of indole-3-acetic acid in the virulence ofPseudomonas savastanoipv.savastanoi

(2014) Isabel M. Aragón et al.   FEMS MICROBIOLOGY LETTERS

Systematic Domain Swaps of Iterative, Nonreducing Polyketide Synthases Provide a Mechanistic Understanding and Rationale For Catalytic Reprogramming

(2014) Adam G. Newman et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Pseudomonas corrugata crpCDEis part of the cyclic lipopeptide corpeptin biosynthetic gene cluster and is involved in bacterial virulence in tomato and in hypersensitive response inNicotiana benthamiana

(2014) Cinzia Patricia Strano et al.   MOLECULAR PLANT PATHOLOGY

Cyclic lipopeptides fromBacillus subtilisactivate distinct patterns of defence responses in grapevine

(2014) Giovanni Farace et al.   MOLECULAR PLANT PATHOLOGY

Traversing the fungal terpenome

(2014) Maureen B. Quin et al.   NATURAL PRODUCT REPORTS

β-Glucosidase BGLU42 is a MYB72-dependent key regulator of rhizobacteria-induced systemic resistance and modulates iron deficiency responses inArabidopsisroots

(2014) Christos Zamioudis et al.   NEW PHYTOLOGIST

Abscisic Acid–Cytokinin Antagonism Modulates Resistance Against Pseudomonas syringae in Tobacco

(2014) Dominik K. Großkinsky et al.   PHYTOPATHOLOGY

Rhizobacterial salicylate production provokes headaches!

(2014) Peter A. H. M. Bakker et al.   PLANT AND SOIL

The inter-kingdom volatile signal indole promotes root development by interfering with auxin signalling

(2014) Aurélien Bailly et al.   PLANT JOURNAL

Gibberellin secreting rhizobacterium, Pseudomonas putida H-2-3 modulates the hormonal and stress physiology of soybean to improve the plant growth under saline and drought conditions

(2014) Sang-Mo Kang et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Human and Plant Fungal Pathogens: The Role of Secondary Metabolites

(2014) Daniel H. Scharf et al.   PLoS Pathogens

Structure and Functions of the Bacterial Microbiota of Plants

(2013) Davide Bulgarelli et al.   Annual Review of Plant Biology

Endophytic fungi: resource for gibberellins and crop abiotic stress resistance

(2013) Abdul Latif Khan et al.   CRITICAL REVIEWS IN BIOTECHNOLOGY

Phytotoxins produced by plant pathogenicStreptomycesspecies

(2013) D.R.D. Bignell et al.   JOURNAL OF APPLIED MICROBIOLOGY

A Mixed Culture of Endophytic Fungi Increases Production of Antifungal Polyketides

(2013) Fernanda O. Chagas et al.   JOURNAL OF CHEMICAL ECOLOGY

Ecological and Mechanistic Insights Into the Direct and Indirect Antimicrobial Properties of Bacillus subtilis Lipopeptides on Plant Pathogens

(2013) J. Falardeau et al.   JOURNAL OF CHEMICAL ECOLOGY

Strategies for mining fungal natural products

(2013) Philipp Wiemann et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Bacteria with ACC deaminase can promote plant growth and help to feed the world

(2013) Bernard R. Glick   MICROBIOLOGICAL RESEARCH

Sniffing on Microbes: Diverse Roles of Microbial Volatile Organic Compounds in Plant Health

(2013) Vasileios Bitas et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Characterization of a Tryptophan 2-Monooxygenase Gene fromPuccinia graminisf. sp.triticiInvolved in Auxin Biosynthesis and Rust Pathogenicity

(2013) Chuntao Yin et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Transposon insertion sequencing: a new tool for systems-level analysis of microorganisms

(2013) Tim van Opijnen et al.   NATURE REVIEWS MICROBIOLOGY

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Unraveling Root Developmental Programs Initiated by Beneficial Pseudomonas spp. Bacteria

(2013) C. Zamioudis et al.   PLANT PHYSIOLOGY

Functional Metagenomics Reveals Novel Pathways of Prebiotic Breakdown by Human Gut Bacteria

(2013) Davide A. Cecchini et al.   PLoS One

Turnerbactin, a Novel Triscatecholate Siderophore from the Shipworm Endosymbiont Teredinibacter turnerae T7901

(2013) Andrew W. Han et al.   PLoS One

Pseudomonas aeruginosa adapts its iron uptake strategies in function of the type of infections

(2013) Pierre Cornelis et al.   Frontiers in Cellular and Infection Microbiology

Cytokinin Signaling Networks

(2012) Ildoo Hwang et al.   Annual Review of Plant Biology

Coronatine Promotes Pseudomonas syringae Virulence in Plants by Activating a Signaling Cascade that Inhibits Salicylic Acid Accumulation

(2012) Xiao-yu Zheng et al.   Cell Host & Microbe

Activity, distribution and function of indole-3-acetic acid biosynthetic pathways in bacteria

(2012) Cheryl L. Patten et al.   CRITICAL REVIEWS IN MICROBIOLOGY

Endophytic mediation of reactive oxygen species and antioxidant activity in plants: a review

(2012) Cyd E. Hamilton et al.   FUNGAL DIVERSITY

The endophytic mycobiota of Arabidopsis thaliana

(2012) Elena García et al.   FUNGAL DIVERSITY

Cytokinins Act Synergistically with Salicylic Acid to Activate Defense Gene Expression in Rice

(2012) Chang-Jie Jiang et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Arabidopsiswat1(walls are thin1)-mediated resistance to the bacterial vascular pathogen,Ralstonia solanacearum, is accompanied by cross-regulation of salicylic acid and tryptophan metabolism

(2012) Nicolas Denancé et al.   PLANT JOURNAL

Thaxtomin A-deficient endophytic Streptomyces sp. enhances plant disease resistance to pathogenic Streptomyces scabies

(2012) Lan Lin et al.   PLANTA

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Two-Component Elements Mediate Interactions between Cytokinin and Salicylic Acid in Plant Immunity

(2012) Cristiana T. Argueso et al.   PLoS Genetics

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

(2012) Joyce E. Loper et al.   PLoS Genetics

Hormonal Modulation of Plant Immunity

(2011) Corné M.J. Pieterse et al.   Annual Review of Cell and Developmental Biology

The Rules of Engagement in the Legume-Rhizobial Symbiosis

(2011) Giles E.D. Oldroyd et al.   Annual Review of Genetics

Endophytic fungus Penicillium chrysogenum, a new source of hypocrellins

(2011) Liyuan Meng et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

Identification and analysis of the gene cluster involved in biosynthesis of paenibactin, a catecholate siderophore produced by Paenibacillus elgii B69

(2011) Yanping Wen et al.   ENVIRONMENTAL MICROBIOLOGY

Production of plant growth modulating volatiles is widespread among rhizosphere bacteria and strongly depends on culture conditions

(2011) D. Blom et al.   ENVIRONMENTAL MICROBIOLOGY

Identification and functional characterization of indole-3-acetamide-mediated IAA biosynthesis in plant-associated Fusarium species

(2011) Elena Tsavkelova et al.   FUNGAL GENETICS AND BIOLOGY

Evolution of cytokinin biosynthesis and degradation

(2011) I. Frebort et al.   JOURNAL OF EXPERIMENTAL BOTANY

Auxin Signaling and Transport Promote Susceptibility to the Root-Infecting Fungal PathogenFusarium oxysporuminArabidopsis

(2011) Brendan N. Kidd et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The microRNA miR393 re-directs secondary metabolite biosynthesis away from camalexin and towards glucosinolates

(2011) Alexandre Robert-Seilaniantz et al.   PLANT JOURNAL

Cytokinins Mediate Resistance against Pseudomonas syringae in Tobacco through Increased Antimicrobial Phytoalexin Synthesis Independent of Salicylic Acid Signaling

(2011) D. K. Grosskinsky et al.   PLANT PHYSIOLOGY

Tri6 Is a Global Transcription Regulator in the Phytopathogen Fusarium graminearum

(2011) Charles G. Nasmith et al.   PLoS Pathogens

The Cytokinin-Activated Transcription Factor ARR2 Promotes Plant Immunity via TGA3/NPR1-Dependent Salicylic Acid Signaling in Arabidopsis

(2010) Jaemyung Choi et al.   DEVELOPMENTAL CELL

A novel endophytic Huperzine A-producing fungus, Shiraia sp. Slf14, isolated from Huperzia serrata

(2010) D. Zhu et al.   JOURNAL OF APPLIED MICROBIOLOGY

Role of the FeoB Protein and Siderophore in Promoting Virulence of Xanthomonas oryzae pv. oryzae on Rice

(2010) A. Pandey et al.   JOURNAL OF BACTERIOLOGY

Streptomyces scabies87-22 Contains a Coronafacic Acid-Like Biosynthetic Cluster That Contributes to Plant–Microbe Interactions

(2010) Dawn R. D. Bignell et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Chemistry and biology of siderophores

(2010) Robert C. Hider et al.   NATURAL PRODUCT REPORTS

Plant immunity: towards an integrated view of plant–pathogen interactions

(2010) Peter N. Dodds et al.   NATURE REVIEWS GENETICS

Innate Immune Responses Activated in Arabidopsis Roots by Microbe-Associated Molecular Patterns

(2010) Y. A. Millet et al.   PLANT CELL

Gibberellins producing endophytic Aspergillus fumigatus sp. LH02 influenced endogenous phytohormonal levels, isoflavonoids production and plant growth in salinity stress

(2010) Abdul Latif Khan et al.   PROCESS BIOCHEMISTRY

Plant-Growth-Promoting Rhizobacteria

(2009) Ben Lugtenberg et al.   Annual Review of Microbiology

Contribution of ergot alkaloids to suppression of a grass-feeding caterpillar assessed with gene knockout endophytes in perennial ryegrass

(2009) Daniel A. Potter et al.   ENTOMOLOGIA EXPERIMENTALIS ET APPLICATA

Genomics of secondary metabolite production by Pseudomonas spp.

(2009) Harald Gross et al.   NATURAL PRODUCT REPORTS

Functional Analyses of LONELY GUY Cytokinin-Activating Enzymes Reveal the Importance of the Direct Activation Pathway in Arabidopsis

(2009) T. Kuroha et al.   PLANT CELL

Identification of Rhodococcus fascians cytokinins and their modus operandi to reshape the plant

(2009) Ine Pertry et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Linking development to defense: auxin in plant–pathogen interactions

(2009) Kemal Kazan et al.   TRENDS IN PLANT SCIENCE

Breaking the Barriers: Microbial Effector Molecules Subvert Plant Immunity

(2008) Vera Göhre et al.   Annual Review of Phytopathology

Determination of absolute structure using Bayesian statistics on Bijvoet differences

(2008) Rob W. W. Hooft et al.   JOURNAL OF APPLIED CRYSTALLOGRAPHY

Genetic Dissection Defines the Roles of Elsinochrome Phytotoxin for Fungal Pathogenesis and Conidiation of the Citrus Pathogen Elsinoë fawcettii

(2008) Hui-Ling Liao et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Hormone interactions in stomatal function

(2008) Biswa R. Acharya et al.   PLANT MOLECULAR BIOLOGY

Role of plant hormones in plant defence responses

(2008) Rajendra Bari et al.   PLANT MOLECULAR BIOLOGY

Altered ecosystem carbon and nitrogen cycles by plant invasion: a meta-analysis

(2007) Chengzhang Liao et al.   NEW PHYTOLOGIST

Trichoderma–plant–pathogen interactions

(2007) Francesco Vinale et al.   SOIL BIOLOGY & BIOCHEMISTRY

Biosynthesis of secondary metabolites in the rice blast fungus Magnaporthe grisea: the role of hybrid PKS-NRPS in pathogenicity

(2007) Jérôme Collemare et al.