Comparative genomic analysis of multiple strains of two unusual plant pathogens: Pseudomonas corrugata and Pseudomonas mediterranea

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Ornicorrugatin, a New Siderophore from Pseudomonas fluorescens AF76

(2015) Sandra Matthijs et al.   ZEITSCHRIFT FUR NATURFORSCHUNG SECTION C-A JOURNAL OF BIOSCIENCES

Insights into Secondary Metabolism from a Global Analysis of Prokaryotic Biosynthetic Gene Clusters

(2014) Peter Cimermancic et al.   CELL

Draft genome sequence of Pseudomonas corrugata, a phytopathogenic bacterium with potential industrial applications

(2014) G. Licciardello et al.   JOURNAL OF BIOTECHNOLOGY

Pseudomonas corrugata crpCDEis part of the cyclic lipopeptide corpeptin biosynthetic gene cluster and is involved in bacterial virulence in tomato and in hypersensitive response inNicotiana benthamiana

(2014) Cinzia Patricia Strano et al.   MOLECULAR PLANT PATHOLOGY

Diversity amongPseudomonas corrugataandPseudomonas mediterraneaisolated from tomato and pepper showing symptoms of pith necrosis in Greece

(2014) E. A. Trantas et al.   PLANT PATHOLOGY

Cheating by type 3 secretion system-negative Pseudomonas aeruginosa during pulmonary infection

(2014) K. Czechowska et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction

(2013) Miguel Redondo-Nieto et al.   BMC GENOMICS

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

IMG 4 version of the integrated microbial genomes comparative analysis system

(2013) Victor M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

antiSMASH 2.0—a versatile platform for genome mining of secondary metabolite producers

(2013) Kai Blin et al.   NUCLEIC ACIDS RESEARCH

BAGEL3: automated identification of genes encoding bacteriocins and (non-)bactericidal posttranslationally modified peptides

(2013) Auke J. van Heel et al.   NUCLEIC ACIDS RESEARCH

The Gac regulon ofPseudomonas fluorescens SBW25

(2013) Xu Cheng et al.   Environmental Microbiology Reports

Discovery, Biosynthesis, and Engineering of Lantipeptides

(2012) Patrick J. Knerr et al.   Annual Review of Biochemistry

Phylogenetic analysis of a gene cluster encoding an additional, rhizobial-like type III secretion system that is narrowly distributed among Pseudomonas syringae strains

(2012) Anastasia D Gazi et al.   BMC MICROBIOLOGY

Natural antimicrobial peptides from bacteria: characteristics and potential applications to fight against antibiotic resistance

(2012) M. Hassan et al.   JOURNAL OF APPLIED MICROBIOLOGY

The PseEF efflux system is a virulence factor of Pseudomonas syringae pv. syringae

(2012) Hyosun Cho et al.   JOURNAL OF MICROBIOLOGY

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

(2012) Joyce E. Loper et al.   PLoS Genetics

Toward almost closed genomes with GapFiller

(2012) Marten Boetzer et al.   GENOME BIOLOGY

TheClavibacter michiganensisSubspecies: Molecular Investigation of Gram-Positive Bacterial Plant Pathogens

(2011) Rudolf Eichenlaub et al.   Annual Review of Phytopathology

Pseudomonas entomophila and Pseudomonas mendocina: Potential models for studying the bacterial type VI secretion system

(2011) Panagiotis F. Sarris et al.   INFECTION GENETICS AND EVOLUTION

Sharing of quorum-sensing signals and role of interspecies communities in a bacterial plant disease

(2011) Taha Hosni et al.   ISME Journal

Complete Genome Sequence of a Beneficial Plant Root-Associated Bacterium, Pseudomonas brassicacearum

(2011) P. Ortet et al.   JOURNAL OF BACTERIOLOGY

N-acyl-homoserine-lactone quorum sensing in tomato phytopathogenic Pseudomonas spp. is involved in the regulation of lipodepsipeptide production

(2011) Grazia Licciardello et al.   JOURNAL OF BIOTECHNOLOGY

Playing the “Harp”: Evolution of Our Understanding ofhrp/hrcGenes

(2010) Anastasia P. Tampakaki et al.   Annual Review of Phytopathology

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

The plant pathogen Pseudomonas fuscovaginae contains two conserved quorum sensing systems involved in virulence and negatively regulated by RsaL and the novel regulator RsaM

(2010) Maura Mattiuzzo et al.   ENVIRONMENTAL MICROBIOLOGY

DNA sequence-based analysis of thePseudomonasspecies

(2010) Magdalena Mulet et al.   ENVIRONMENTAL MICROBIOLOGY

In silico analysis reveals multiple putative type VI secretion systems and effector proteins in Pseudomonas syringae pathovars

(2010) PANAGIOTIS F. SARRIS et al.   MOLECULAR PLANT PATHOLOGY

Analysis of Achromobactin Biosynthesis by Pseudomonas syringae pv. syringae B728a

(2009) A. D. Berti et al.   JOURNAL OF BACTERIOLOGY

The Transcriptional ActivatorrfiAIs Quorum-Sensing Regulated by Cotranscription with theluxIHomologpcoIand Is Essential for Plant Virulence inPseudomonas corrugata

(2009) Grazia Licciardello et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes

(2009) Konstantinos Mavromatis et al.   Standards in Genomic Sciences