ITS2 metabarcoding analysis complements lichen mycobiome diversity data

Fungal Identification Using Molecular Tools: A Primer for the Natural Products Research Community

(2017) Huzefa A. Raja et al.   JOURNAL OF NATURAL PRODUCTS

ITS1 metabarcoding highlights low specificity of lichen mycobiomes at a local scale

(2017) Fernando Fernández-Mendoza et al.   MOLECULAR ECOLOGY

Effects of Growth Media on the Diversity of Culturable Fungi from Lichens

(2017) Lucia Muggia et al.   MOLECULES

Yeasts in Pucciniomycotina

(2017) Franz Oberwinkler   MYCOLOGICAL PROGRESS

Unexpected associated microalgal diversity in the lichen Ramalina farinacea is uncovered by pyrosequencing analyses

(2017) Patricia Moya et al.   PLoS One

Pollen DNA barcoding: current applications and future prospects

(2016) Karen L. Bell et al.   GENOME

Barcoding lichen-forming fungi using 454 pyrosequencing is challenged by artifactual and biological sequence variation

(2016) Kristiina Mark et al.   GENOME

Scaling up discovery of hidden diversity in fungi: impacts of barcoding approaches

(2016) Rebecca Yahr et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The invisible dimension of fungal diversity

(2016) David Hibbett   SCIENCE

Basidiomycete yeasts in the cortex of ascomycete macrolichens

(2016) Toby Spribille et al.   SCIENCE

Fungal identification biases in microbiome projects

(2016) Leho Tedersoo et al.   Environmental Microbiology Reports

Freshwater vertebrate metabarcoding on Illumina platforms using double-indexed primers of the mitochondrial 16S rRNA gene

(2016) Miguel Vences et al.   Conservation Genetics Resources

Metabarcoding of fungal communities associated with bark beetles

(2016) Kirsten E. Miller et al.   Ecology and Evolution

Top 50 most wanted fungi

(2016) R. Henrik Nilsson et al.   MycoKeys

The phylogenetic analysis of fungi associated with lichenized ascomycete genus Bryoria reveals new lineages in the Tremellales including a new species Tremella huuskonenii hyperparasitic on Phacopsis huuskonenii

(2015) Hanna Lindgren et al.   Fungal Biology

Phylogenetic placement of the lichenicolous, anamorphic genus Lichenodiplis and its connection to Muellerella -like teleomorphs

(2015) Lucia Muggia et al.   Fungal Biology

Extremotolerant fungi from alpine rock lichens and their phylogenetic relationships

(2015) Lucia Muggia et al.   FUNGAL DIVERSITY

Mycobiome: Approaches to analysis of intestinal fungi

(2015) Jie Tang et al.   JOURNAL OF IMMUNOLOGICAL METHODS

A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts

(2015) R. Henrik Nilsson et al.   MICROBES AND ENVIRONMENTS

Community Analyses Uncover High Diversity of Lichenicolous Fungi in Alpine Habitats

(2015) Antonia Fleischhacker et al.   MICROBIAL ECOLOGY

Structure and function of the global ocean microbiome

(2015) S. Sunagawa et al.   SCIENCE

PIPITS: an automated pipeline for analyses of fungal internal transcribed spacer sequences from the Illumina sequencing platform

(2015) Hyun S. Gweon et al.   Methods in Ecology and Evolution

Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi

(2015) Leho Tedersoo et al.   MycoKeys

Metabarcoding Analysis of Fungal Diversity in the Phyllosphere and Carposphere of Olive (Olea europaea)

(2015) Ahmed Abdelfattah et al.   PLoS One

Rock black fungi: excellence in the extremes, from the Antarctic to space

(2014) Laura Selbmann et al.   CURRENT GENETICS

Fungal succession in an in-vessel composting system characterized using 454 pyrosequencing

(2014) Adrian Langarica-Fuentes et al.   FEMS MICROBIOLOGY ECOLOGY

Exploring functional contexts of symbiotic sustain within lichen-associated bacteria by comparative omics

(2014) Martin Grube et al.   ISME Journal

Universal and blocking primer mismatches limit the use of high-throughput DNA sequencing for the quantitative metabarcoding of arthropods

(2014) J. Piñol et al.   Molecular Ecology Resources

An Illumina metabarcoding pipeline for fungi

(2014) Miklós Bálint et al.   Ecology and Evolution

A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents

(2013) Matthieu Leray et al.   Frontiers in Zoology

Environmental monitoring using next generation sequencing: rapid identification of macroinvertebrate bioindicator species

(2013) Melissa E Carew et al.   Frontiers in Zoology

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

ITS1 versus ITS2 as DNA metabarcodes for fungi

(2013) R. Blaalid et al.   Molecular Ecology Resources

Novel Evolutionary Lineages Revealed in the Chaetothyriales (Fungi) Based on Multigene Phylogenetic Analyses and Comparison of ITS Secondary Structure

(2013) Martina Réblová et al.   PLoS One

Effectiveness of Annealing Blocking Primers versus Restriction Enzymes for Characterization of Generalist Diets: Unexpected Prey Revealed in the Gut Contents of Two Coral Reef Fish Species

(2013) Matthieu Leray et al.   PLoS One

Ion Torrent PGM as Tool for Fungal Community Analysis: A Case Study of Endophytes in Eucalyptus grandis Reveals High Taxonomic Diversity

(2013) Martin Kemler et al.   PLoS One

EMPeror: a tool for visualizing high-throughput microbial community data

(2013) Yoshiki Vázquez-Baeza et al.   GigaScience

CloVR-ITS: Automated internal transcribed spacer amplicon sequence analysis pipeline for the characterization of fungal microbiota

(2013) James Robert White et al.   Microbiome

Host and geographic structure of endophytic and endolichenic fungi at a continental scale

(2012) Jana M. U'Ren et al.   AMERICAN JOURNAL OF BOTANY

Fungal palaeodiversity revealed using high-throughput metabarcoding of ancient DNA from arctic permafrost

(2012) Eva Bellemain et al.   ENVIRONMENTAL MICROBIOLOGY

Utilizing ITS1 and ITS2 to study environmental fungal diversity using pyrosequencing

(2012) Cécile Monard et al.   FEMS MICROBIOLOGY ECOLOGY

Comparison of ITS1 and ITS2 rDNA in 454 sequencing of hyperdiverse fungal communities

(2012) Anna L. Bazzicalupo et al.   Fungal Ecology

Towards next-generation biodiversity assessment using DNA metabarcoding

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

In This Issue

(2012)   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

A preliminary survey of lichen associated eukaryotes using pyrosequencing

(2011) Scott T. BATES et al.   LICHENOLOGIST

ITS-1 versus ITS-2 pyrosequencing: a comparison of fungal populations in truffle grounds

(2011) Antonietta Mello et al.   MYCOLOGIA

Intragenomic variation in the ITS rDNA region obscures phylogenetic relationships and inflates estimates of operational taxonomic units in genus Laetiporus

(2011) Daniel L. Lindner et al.   MYCOLOGIA

Refining the DNA barcode for land plants

(2011) P. M. Hollingsworth   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pyrosequencing faecal DNA to determine diet of little penguins: is what goes in what comes out?

(2010) Bruce E. Deagle et al.   CONSERVATION GENETICS

Fungal composition of lichen thalli assessed by single strand conformation polymorphism

(2010) Lucia MUGGIA et al.   LICHENOLOGIST

Community Analysis Reveals Close Affinities Between Endophytic and Endolichenic Fungi in Mosses and Lichens

(2010) Jana M. U’Ren et al.   MICROBIAL ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Black fungi in lichens from seasonally arid habitats

(2010) S. Harutyunyan et al.   STUDIES IN MYCOLOGY

Phylogenetic lineages in the Capnodiales

(2010) P.W. Crous et al.   STUDIES IN MYCOLOGY

Sufficient sampling for asymptotic minimum species richness estimators

(2009) Anne Chao et al.   ECOLOGY

The ITS region as a target for characterization of fungal communities using emerging sequencing technologies

(2009) Rolf Henrik Nilsson et al.   FEMS MICROBIOLOGY LETTERS

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Species-specific structural and functional diversity of bacterial communities in lichen symbioses

(2009) Martin Grube et al.   ISME Journal

A Phylogenetic Estimation of Trophic Transition Networks for Ascomycetous Fungi: Are Lichens Cradles of Symbiotrophic Fungal Diversification?

(2009) A. Elizabeth Arnold et al.   SYSTEMATIC BIOLOGY

Intragenomic Variation of Fungal Ribosomal Genes Is Higher than Previously Thought

(2008) U. K. Simon et al.   MOLECULAR BIOLOGY AND EVOLUTION