ITS1 metabarcoding highlights low specificity of lichen mycobiomes at a local scale

Phylogenetic diversity of bulbil-forming lichenicolous fungi in Cantharellales including a new genus and species

(2016) James D. Lawrey et al.   BRYOLOGIST

Contribution to the phylogeny and taxonomy of the genus Taeniolella, with a focus on lichenicolous taxa

(2016) Damien Ertz et al.   Fungal Biology

Basidiomycete yeasts in the cortex of ascomycete macrolichens

(2016) Toby Spribille et al.   SCIENCE

Lichen-Associated Fungal Community in Hypogymnia hypotrypa (Parmeliaceae, Ascomycota) Affected by Geographic Distribution and Altitude

(2016) Yanyan Wang et al.   Frontiers in Microbiology

Understanding Microbial Multi-Species Symbioses

(2016) Ines A. Aschenbrenner et al.   Frontiers in Microbiology

Microbiome change by symbiotic invasion in lichens

(2015) Mats Wedin et al.   ENVIRONMENTAL MICROBIOLOGY

Phylogenetic placement of the lichenicolous, anamorphic genus Lichenodiplis and its connection to Muellerella -like teleomorphs

(2015) Lucia Muggia et al.   Fungal Biology

Phylogenetic insights resolve Dacampiaceae (Pleosporales) as polyphyletic: Didymocyrtis (Pleosporales, Phaeosphaeriaceae) with Phoma-like anamorphs resurrected and segregated from Polycoccum (Trypetheliales, Polycoccaceae fam. nov.)

(2015) Damien Ertz et al.   FUNGAL DIVERSITY

Extremotolerant fungi from alpine rock lichens and their phylogenetic relationships

(2015) Lucia Muggia et al.   FUNGAL DIVERSITY

Community Analyses Uncover High Diversity of Lichenicolous Fungi in Alpine Habitats

(2015) Antonia Fleischhacker et al.   MICROBIAL ECOLOGY

Interaction type influences ecological network structure more than local abiotic conditions: evidence from endophytic and endolichenic fungi at a continental scale

(2015) Pierre-Luc Chagnon et al.   OECOLOGIA

Diversity and distribution of lichen-associated fungi in the Ny-Ålesund Region (Svalbard, High Arctic) as revealed by 454 pyrosequencing

(2015) Tao Zhang et al.   Scientific Reports

Photobiont selectivity leads to ecological tolerance and evolutionary divergence in a polymorphic complex of lichenized fungi

(2014) Lucia Muggia et al.   ANNALS OF BOTANY

circlize implements and enhances circular visualization in R

(2014) Zuguang Gu et al.   BIOINFORMATICS

Exploring functional contexts of symbiotic sustain within lichen-associated bacteria by comparative omics

(2014) Martin Grube et al.   ISME Journal

Swarm: robust and fast clustering method for amplicon-based studies

(2014) Frédéric Mahé et al.   PeerJ

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

ITS1 versus ITS2 as DNA metabarcodes for fungi

(2013) R. Blaalid et al.   Molecular Ecology Resources

Illumina metabarcoding of a soil fungal community

(2013) Philipp-André Schmidt et al.   SOIL BIOLOGY & BIOCHEMISTRY

Host and geographic structure of endophytic and endolichenic fungi at a continental scale

(2012) Jana M. U'Ren et al.   AMERICAN JOURNAL OF BOTANY

The genetic structure of the cosmopolitan three-partner lichenRamalina farinaceaevidences the concerted diversification of symbionts

(2012) Eva M. del Campo et al.   FEMS MICROBIOLOGY ECOLOGY

Alphaproteobacterial communities in geographically distant populations of the lichenCetraria aculeata

(2012) Christian Printzen et al.   FEMS MICROBIOLOGY ECOLOGY

Fast, accurate error-correction of amplicon pyrosequences using Acacia

(2012) Lauren Bragg et al.   NATURE METHODS

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

(2012) C. L. Schoch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A conceptual framework for the evolution of ecological specialisation

(2011) Timothée Poisot et al.   ECOLOGY LETTERS

Integrative analysis of environmental sequences using MEGAN4

(2011) D. H. Huson et al.   GENOME RESEARCH

A preliminary survey of lichen associated eukaryotes using pyrosequencing

(2011) Scott T. BATES et al.   LICHENOLOGIST

raxmlGUI: a graphical front-end for RAxML

(2011) Daniele Silvestro et al.   ORGANISMS DIVERSITY & EVOLUTION

Bacterial Communities Associated with the Lichen Symbiosis

(2010) Scott T. Bates et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases

(2010) Eva Bellemain et al.   BMC MICROBIOLOGY

Two Trebouxia algae with different physiological performances are ever-present in lichen thalli of Ramalina farinacea. Coexistence versus Competition?

(2010) Leonardo M. Casano et al.   ENVIRONMENTAL MICROBIOLOGY

Fungal composition of lichen thalli assessed by single strand conformation polymorphism

(2010) Lucia MUGGIA et al.   LICHENOLOGIST

Community Analysis Reveals Close Affinities Between Endophytic and Endolichenic Fungi in Mosses and Lichens

(2010) Jana M. U’Ren et al.   MICROBIAL ECOLOGY

Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

(2010) ANTHONY S. AMEND et al.   MOLECULAR ECOLOGY

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

Black fungi in lichens from seasonally arid habitats

(2010) S. Harutyunyan et al.   STUDIES IN MYCOLOGY

A microbiotic survey of lichen-associated bacteria reveals a new lineage from the Rhizobiales

(2010) Brendan P. Hodkinson et al.   SYMBIOSIS

Weighted-Interaction Nestedness Estimator (WINE): A new estimator to calculate over frequency matrices

(2009) Javier Galeano et al.   ENVIRONMENTAL MODELLING & SOFTWARE

Species-specific structural and functional diversity of bacterial communities in lichen symbioses

(2009) Martin Grube et al.   ISME Journal

A Phylogenetic Estimation of Trophic Transition Networks for Ascomycetous Fungi: Are Lichens Cradles of Symbiotrophic Fungal Diversification?

(2009) A. Elizabeth Arnold et al.   SYSTEMATIC BIOLOGY

WHAT DO INTERACTION NETWORK METRICS TELL US ABOUT SPECIALIZATION AND BIOLOGICAL TRAITS

(2008) Nico Blüthgen et al.   ECOLOGY

In situ analysis of the bacterial community associated with the reindeer lichen Cladonia arbuscula reveals predominance of Alphaproteobacteria

(2008) Massimiliano Cardinale et al.   FEMS MICROBIOLOGY ECOLOGY

A consistent metric for nestedness analysis in ecological systems: reconciling concept and measurement

(2008) Mário Almeida-Neto et al.   OIKOS