The environmental genomics of metazoan thermal adaptation

Climate change, adaptation, and phenotypic plasticity: the problem and the evidence

(2014) Juha Merilä et al.   Evolutionary Applications

Parallel Geographic Variation in Drosophila melanogaster

(2014) Josie A. Reinhardt et al.   GENETICS

Widespread rapid reductions in body size of adult salamanders in response to climate change

(2014) Nicholas M. Caruso et al.   GLOBAL CHANGE BIOLOGY

Body size and activity times mediate mammalian responses to climate change

(2014) Christy M. McCain et al.   GLOBAL CHANGE BIOLOGY

ADrosophilalaboratory evolution experiment points to low evolutionary potential under increased temperatures likely to be experienced in the future

(2014) M. F. Schou et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Genome Scans for Detecting Footprints of Local Adaptation Using a Bayesian Factor Model

(2014) Nicolas Duforet-Frebourg et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenomic analyses reveal latitudinal population structure and polymorphisms in heat stress genes in the North Atlantic snailNucella lapillus

(2014) Nathaniel D. Chu et al.   MOLECULAR ECOLOGY

RNAi screening comes of age: improved techniques and complementary approaches

(2014) Stephanie E. Mohr et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Single-Cell RNA-Seq Reveals Dynamic, Random Monoallelic Gene Expression in Mammalian Cells

(2014) Q. Deng et al.   SCIENCE

Metatranscriptomics of the Human Oral Microbiome during Health and Disease

(2014) P. Jorth et al.   mBio

Deep transcriptome-sequencing and proteome analysis of the hydrothermal vent annelid Alvinella pompejana identifies the CvP-bias as a robust measure of eukaryotic thermostability

(2013) Thomas Holder et al.   Biology Direct

Transcriptional responses to temperature and low oxygen stress in Atlantic salmon studied with next-generation sequencing technology

(2013) Pål A Olsvik et al.   BMC GENOMICS

Model of gene expression in extreme cold - reference transcriptome for the high-Antarctic cryopelagic notothenioid fish Pagothenia borchgrevinki

(2013) Kevin T Bilyk et al.   BMC GENOMICS

De novo assembly and characterization of tissue specific transcriptomes in the emerald notothen, Trematomus bernacchii

(2013) Troy J Huth et al.   BMC GENOMICS

Novel genomic resources for a climate change sensitive mammal: characterization of the American pika transcriptome

(2013) Matthew A Lemay et al.   BMC GENOMICS

RNA-seq analysis reveals extensive transcriptional plasticity to temperature stress in a freshwater fish species

(2013) Steve Smith et al.   BMC GENOMICS

Do stream fish track climate change? Assessing distribution shifts in recent decades

(2013) Lise Comte et al.   ECOGRAPHY

Heat freezes niche evolution

(2013) Miguel B. Araújo et al.   ECOLOGY LETTERS

Rapid evolution of quantitative traits: theoretical perspectives

(2013) Michael Kopp et al.   Evolutionary Applications

Calling behaviour under climate change: geographical and seasonal variation of calling temperatures in ectotherms

(2013) Diego Llusia et al.   GLOBAL CHANGE BIOLOGY

Beef cattle body temperature during climatic stress: a genome-wide association study

(2013) Jeremy T. Howard et al.   INTERNATIONAL JOURNAL OF BIOMETEOROLOGY

Next-generation transcriptome profiling reveals insights into genetic factors contributing to growth differences and temperature adaptation in Australian populations of barramundi (Lates calcarifer)

(2013) James R. Newton et al.   Marine Genomics

A Guide for the Design of Evolve and Resequencing Studies

(2013) Robert Kofler et al.   MOLECULAR BIOLOGY AND EVOLUTION

Massive Habitat-Specific Genomic Response in D. melanogaster Populations during Experimental Evolution in Hot and Cold Environments

(2013) Ray Tobler et al.   MOLECULAR BIOLOGY AND EVOLUTION

Thermal adaptation and acclimation of ectotherms from differing aquatic climates

(2013) Shawn R. Narum et al.   MOLECULAR ECOLOGY

RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling

(2013) B. Arnold et al.   MOLECULAR ECOLOGY

Gene expression under chronic heat stress in populations of the mustard hill coral (Porites astreoides ) from different thermal environments

(2013) C. D. Kenkel et al.   MOLECULAR ECOLOGY

Ecological genomics of local adaptation

(2013) Outi Savolainen et al.   NATURE REVIEWS GENETICS

RNA-Seq reveals expression signatures of genes involved in oxygen transport, protein synthesis, folding, and degradation in response to heat stress in catfish

(2013) Shikai Liu et al.   PHYSIOLOGICAL GENOMICS

Variation of Gene Expression Associated with Colonisation of an Anthropized Environment: Comparison between African and European Populations of Drosophila simulans

(2013) François Wurmser et al.   PLoS One

De Novo Assembly, Gene Annotation, and Marker Discovery in Stored-Product Pest Liposcelis entomophila (Enderlein) Using Transcriptome Sequences

(2013) Dan-Dan Wei et al.   PLoS One

Genomic basis for coral resilience to climate change

(2013) Daniel J. Barshis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cryptic Variation in Morphological Evolution: HSP90 as a Capacitor for Loss of Eyes in Cavefish

(2013) N. Rohner et al.   SCIENCE

Investigating the molecular basis of local adaptation to thermal stress: population differences in gene expression across the transcriptome of the copepod Tigriopus californicus

(2012) Sean D Schoville et al.   BMC EVOLUTIONARY BIOLOGY

Characterization of the transcriptome of an ecologically important avian species, the Vinous-throated Parrotbill Paradoxornis webbianus bulomachus (Paradoxornithidae; Aves)

(2012) Jui-Hua Chu et al.   BMC GENOMICS

Gene fragmentation in bacterial draft genomes: extent, consequences and mitigation

(2012) Jonathan L Klassen et al.   BMC GENOMICS

Transcriptome analysis using next-generation sequencing

(2012) Kai-Oliver Mutz et al.   CURRENT OPINION IN BIOTECHNOLOGY

LARGE-SCALE CANDIDATE GENE SCAN REVEALS THE ROLE OF CHEMORECEPTOR GENES IN HOST PLANT SPECIALIZATION AND SPECIATION IN THE PEA APHID

(2012) Carole M. Smadja et al.   EVOLUTION

DIFFERENCES IN THE REGULATION OF GROWTH AND BIOMINERALIZATION GENES REVEALED THROUGH LONG-TERM COMMON-GARDEN ACCLIMATION AND EXPERIMENTAL GENOMICS IN THE PURPLE SEA URCHIN

(2012) Melissa H. Pespeni et al.   EVOLUTION

Global gene expression analysis of gill tissues from normal and thermally selected strains of rainbow trout

(2012) Engkong Tan et al.   FISHERIES SCIENCE

Phenotypic plasticity and evolutionary demographic responses to climate change: taking theory out to the field

(2012) Luis-Miguel Chevin et al.   FUNCTIONAL ECOLOGY

Proteomics to Assess the Role of Phenotypic Plasticity in Aquatic Organisms Exposed to Pollution and Global Warming

(2012) F. Silvestre et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Proteomic responses of blue mussel (Mytilus) congeners to temperature acclimation

(2012) P. A. Fields et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Comparative genomics in ecological physiology: toward a more nuanced understanding of acclimation and adaptation

(2012) A. Whitehead   JOURNAL OF EXPERIMENTAL BIOLOGY

Differential hippocampal gene expression is associated with climate-related natural variation in memory and the hippocampus in food-caching chickadees

(2012) V. V. Pravosudov et al.   MOLECULAR ECOLOGY

Monitoring adaptive genetic responses to environmental change

(2012) MICHAEL M. HANSEN et al.   MOLECULAR ECOLOGY

Genome-wide patterns of latitudinal differentiation among populations ofDrosophila melanogasterfrom North America

(2012) Daniel K. Fabian et al.   MOLECULAR ECOLOGY

The effect of RAD allele dropout on the estimation of genetic variation within and between populations

(2012) Mathieu Gautier et al.   MOLECULAR ECOLOGY

Population genomics based on low coverage sequencing: how low should we go?

(2012) C. Alex Buerkle et al.   MOLECULAR ECOLOGY

Transcriptome-wide polymorphisms of red abalone (Haliotis rufescens) reveal patterns of gene flow and local adaptation

(2012) Pierre De Wit et al.   MOLECULAR ECOLOGY

Genome-wide association genetics of an adaptive trait in lodgepole pine

(2012) THOMAS L. PARCHMAN et al.   MOLECULAR ECOLOGY

Genetics of gene expression responses to temperature stress in a sea urchin gene network

(2012) DANIEL E. RUNCIE et al.   MOLECULAR ECOLOGY

Adaptation ofDrosophilato a novel laboratory environment reveals temporally heterogeneous trajectories of selected alleles

(2012) PABLO OROZCO-terWENGEL et al.   MOLECULAR ECOLOGY

Reference-free transcriptome assembly in non-model animals from next-generation sequencing data

(2012) V. CAHAIS et al.   Molecular Ecology Resources

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

The genomic basis of adaptive evolution in threespine sticklebacks

(2012) Felicity C. Jones et al.   NATURE

Modelling the Regulation of Thermal Adaptation in Candida albicans, a Major Fungal Pathogen of Humans

(2012) Michelle D. Leach et al.   PLoS One

SNP Detection from De Novo Transcriptome Sequencing in the Bivalve Macoma balthica: Marker Development for Evolutionary Studies

(2012) Eric Pante et al.   PLoS One

Exploring the limit of metazoan thermal tolerance via comparative proteomics: thermally induced changes in protein abundance by two hydrothermal vent polychaetes

(2012) G. F. Dilly et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Rapid development of molecular resources for a freshwater mussel, Villosa lienosa (Bivalvia:Unionidae), using an RNA-seq-based approach

(2012) Ruijia Wang et al.   Freshwater Science

Physiological Correlates of Geographic Range in Animals

(2011) Francisco Bozinovic et al.   Annual Review of Ecology Evolution and Systematics

The Physiology of Global Change: Linking Patterns to Mechanisms

(2011) George N. Somero   Annual Review of Marine Science

The proteomic response of sea squirts (genus Ciona) to acute heat stress: A global perspective on the thermal stability of proteins

(2011) Loredana Serafini et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

THE GENETIC ARCHITECTURE OF ADAPTATION UNDER MIGRATION-SELECTION BALANCE

(2011) Sam Yeaman et al.   EVOLUTION

Genome Evolution and Meiotic Maps by Massively Parallel DNA Sequencing: Spotted Gar, an Outgroup for the Teleost Genome Duplication

(2011) Angel Amores et al.   GENETICS

Ecologically relevant measures of tolerance to potentially lethal temperatures

(2011) J. S. Terblanche et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Thermal adaptation and ecological speciation

(2011) I. KELLER et al.   MOLECULAR ECOLOGY

Next-generation sequencing of transcriptomes: a guide to RNA isolation in nonmodel animals

(2011) PHILIPPE GAYRAL et al.   Molecular Ecology Resources

Genomic islands of divergence in hybridizingHeliconiusbutterflies identified by large-scale targeted sequencing

(2011) Nicola J. Nadeau et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Antarctic Krill 454 Pyrosequencing Reveals Chaperone and Stress Transcriptome

(2011) Melody S. Clark et al.   PLoS One

Gene Discovery in the Threatened Elkhorn Coral: 454 Sequencing of the Acropora palmata Transcriptome

(2011) Nicholas R. Polato et al.   PLoS One

Rapid Range Shifts of Species Associated with High Levels of Climate Warming

(2011) I.-C. Chen et al.   SCIENCE

Biodiversity and Climate Change: Integrating Evolutionary and Ecological Responses of Species and Communities

(2010) Sébastien Lavergne et al.   Annual Review of Ecology Evolution and Systematics

Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon

(2010) Shawn T O'Neil et al.   BMC GENOMICS

The Genetics of Human Adaptation: Hard Sweeps, Soft Sweeps, and Polygenic Adaptation

(2010) Jonathan K. Pritchard et al.   CURRENT BIOLOGY

Why is adaptation prevented at ecological margins? New insights from individual-based simulations

(2010) Jon R. Bridle et al.   ECOLOGY LETTERS

To Pool, or Not to Pool?

(2010) David J. Cutler et al.   GENETICS

Genomic Differentiation Between Temperate and Tropical Australian Populations of Drosophila melanogaster

(2010) B. Kolaczkowski et al.   GENETICS

The Next Generation of Molecular Markers From Massively Parallel Sequencing of Pooled DNA Samples

(2010) Andreas Futschik et al.   GENETICS

Using Environmental Correlations to Identify Loci Underlying Local Adaptation

(2010) G. Coop et al.   GENETICS

Applications of next generation sequencing in molecular ecology of non-model organisms

(2010) R Ekblom et al.   HEREDITY

The proteomic response of the mussel congeners Mytilus galloprovincialis and M. trossulus to acute heat stress: implications for thermal tolerance limits and metabolic costs of thermal stress

(2010) L. Tomanek et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Quantitative metabolomics based on gas chromatography mass spectrometry: status and perspectives

(2010) Maud M. Koek et al.   Metabolomics

Adaptation genomics: the next generation

(2010) Jessica Stapley et al.   TRENDS IN ECOLOGY & EVOLUTION

Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

(2009) Eli Meyer et al.   BMC GENOMICS

Who believes in whole-genome scans for selection?

(2009) J Hermisson   HEREDITY

Systems genetics of complex traits in Drosophila melanogaster

(2009) Julien F Ayroles et al.   NATURE GENETICS

Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts

(2009) Joshua Z Levin et al.   GENOME BIOLOGY

Genomic Analysis of Adaptive Differentiation in Drosophila melanogaster

(2008) T. L. Turner et al.   GENETICS

Adaptations to Climate in Candidate Genes for Common Metabolic Disorders

(2008) Angela M. Hancock et al.   PLoS Genetics

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

Macrophysiology for a changing world

(2008) S. L Chown et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES