The genomic footprint of climate adaptation in Chironomus riparius

Chironomus riparius (Diptera) genome sequencing reveals the impact of minisatellite transposable elements on population divergence

(2017) Ann-Marie Oppold et al.   MOLECULAR ECOLOGY

The role of genetic diversity and past-history selection pressures in the susceptibility of Chironomus riparius populations to environmental stress

(2017) João A.M. Pedrosa et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Regulation of genes related to immune signaling and detoxification in Apis mellifera by an inhibitor of histone deacetylation

(2017) Yee-Tung Hu et al.   Scientific Reports

Genomic Evidence for Adaptive Inversion Clines inDrosophila melanogaster

(2016) Martin Kapun et al.   MOLECULAR BIOLOGY AND EVOLUTION

Population genetic evidence for cold adaptation in EuropeanDrosophila melanogasterpopulations

(2016) Vedran Božičević et al.   MOLECULAR ECOLOGY

Secondary contact and local adaptation contribute to genome-wide patterns of clinal variation inDrosophila melanogaster

(2016) Alan O. Bergland et al.   MOLECULAR ECOLOGY

Genomics of clinal variation inDrosophila: disentangling the interactions of selection and demography

(2016) Thomas Flatt   MOLECULAR ECOLOGY

Determinants of genetic diversity

(2016) Hans Ellegren et al.   NATURE REVIEWS GENETICS

Support for the evolutionary speed hypothesis from intraspecific population genetic data in the non-biting midgeChironomus riparius

(2016) Ann-Marie Oppold et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Detecting Polygenic Evolution: Problems, Pitfalls, and Promises

(2016) Maren Wellenreuther et al.   TRENDS IN GENETICS

What Is Speciation?

(2016) B. Jesse Shapiro et al.   PLoS Genetics

How reticulated are species?

(2015) James Mallet et al.   BIOESSAYS

Cytogenetic index and functional genome alterations in Chironomus piger Strenzke (Diptera, Chironomidae) in the assessment of sediment pollution: A case study of Bulgarian and UK rivers

(2015) P. Michailova et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Epigenetic alterations and decreasing insecticide sensitivity of the Asian tiger mosquito Aedes albopictus

(2015) A. Oppold et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Unique evolutionary trajectories in repeated adaptation to hydrogen sulphide-toxic habitats of a neotropical fish (Poecilia mexicana)

(2015) Markus Pfenninger et al.   MOLECULAR ECOLOGY

Revisiting classic clines in Drosophila melanogaster in the age of genomics

(2015) Jeffrey R. Adrion et al.   TRENDS IN GENETICS

LEA: AnRpackage for landscape and ecological association studies

(2015) Eric Frichot et al.   Methods in Ecology and Evolution

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Functional genomics of acclimation and adaptation in response to thermal stress in Daphnia

(2014) Lev Y Yampolsky et al.   BMC GENOMICS

Morphological deformations of hard-chitinized mouthpart structures in larvae of the genus Chironomus (Diptera, Chironomidae) as the index of organic pollution in freshwater ecosystems

(2014) L. P. Grebenjuk et al.   Inland Water Biology

Genome scan methods against more complex models: when and how much should we trust them?

(2014) Pierre de Villemereuil et al.   MOLECULAR ECOLOGY

Inferring human population size and separation history from multiple genome sequences

(2014) Stephan Schiffels et al.   NATURE GENETICS

Thermal adaptation and clinal mitochondrial DNA variation of European anchovy

(2014) G. Silva et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genomic Evidence of Rapid and Stable Adaptive Oscillations over Seasonal Time Scales in Drosophila

(2014) Alan O. Bergland et al.   PLoS Genetics

Haplotype Estimation Using Sequencing Reads

(2013) Olivier Delaneau et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Genomic basis of ecological niche divergence among cryptic sister species of non-biting midges

(2013) Hanno Schmidt et al.   BMC GENOMICS

Influence of heavy metals on glyceraldehyde-3-phosphate dehydrogenase interactions inChironomus ripariuslarvae

(2013) Isaac Wai et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Robust Identification of Local Adaptation from Allele Frequencies

(2013) T. Gunther et al.   GENETICS

Testing for Associations between Loci and Environmental Gradients Using Latent Factor Mixed Models

(2013) Eric Frichot et al.   MOLECULAR BIOLOGY AND EVOLUTION

Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations

(2013) Stéphane De Mita et al.   MOLECULAR ECOLOGY

Ecological genomics of local adaptation

(2013) Outi Savolainen et al.   NATURE REVIEWS GENETICS

Experimental evidence for niche segregation in a sister species pair of non-biting midges

(2012) Sabrina Nemec et al.   HYDROBIOLOGIA

Ecdysone signaling in adult Drosophila melanogaster

(2012) Christoph C. Schwedes et al.   JOURNAL OF INSECT PHYSIOLOGY

A Critical Assessment of Storytelling: Gene Ontology Categories and the Importance of Validating Genomic Scans

(2012) Pavlos Pavlidis et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome-wide patterns of latitudinal differentiation among populations ofDrosophila melanogasterfrom North America

(2012) Daniel K. Fabian et al.   MOLECULAR ECOLOGY

Evolutionary determinants of population differences in population growth rate × habitat temperature interactions in Chironomus riparius

(2012) Sabrina Nemec et al.   OECOLOGIA

fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios

(2011) Laurent Excoffier et al.   BIOINFORMATICS

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)

(2011) R. Kofler et al.   BIOINFORMATICS

Ecological Genomics of Anopheles gambiae Along a Latitudinal Cline: A Population-Resequencing Approach

(2011) C. Cheng et al.   GENETICS

Extent and scale of local adaptation in salmonid fishes: review and meta-analysis

(2011) D J Fraser et al.   HEREDITY

The Drosophila Toll Signaling Pathway

(2011) S. Valanne et al.   JOURNAL OF IMMUNOLOGY

The coupling hypothesis: why genome scans may fail to map local adaptation genes

(2011) NICOLAS BIERNE et al.   MOLECULAR ECOLOGY

Comparison ofFSToutlier tests for SNP loci under selection

(2011) SHAWN R. NARUM et al.   Molecular Ecology Resources

The Genomic Basis of Local Climatic Adaptation

(2011) O. Savolainen   SCIENCE

Simulated climate change conditions unveil the toxic potential of the fungicide pyrimethanil on the midgeChironomus riparius: a multigeneration experiment

(2011) Ruth Müller et al.   Ecology and Evolution

Genomic Differentiation Between Temperate and Tropical Australian Populations of Drosophila melanogaster

(2010) B. Kolaczkowski et al.   GENETICS

The Next Generation of Molecular Markers From Massively Parallel Sequencing of Pooled DNA Samples

(2010) Andreas Futschik et al.   GENETICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Hybrid syndrome-induced postzygotic reproductive isolation: A second reproduction barrier in Chironomus thummi (Diptera, Chironomidae)

(2010) K. Hägele   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Detecting loci under selection in a hierarchically structured population

(2009) L Excoffier et al.   HEREDITY

Pervasive Natural Selection in the Drosophila Genome?

(2009) Guy Sella et al.   PLoS Genetics

Evidence of Spatially Varying Selection Acting on Four Chromatin-Remodeling Loci in Drosophila melanogaster

(2008) M. T. Levine et al.   GENETICS

Genomic Analysis of Adaptive Differentiation in Drosophila melanogaster

(2008) T. L. Turner et al.   GENETICS

Reproductive Isolation and Ecological Niche Partition among Larvae of the Morphologically Cryptic Sister Species Chironomus riparius and C. piger

(2008) Markus Pfenninger et al.   PLoS One

An amino acid polymorphism in the couch potato gene forms the basis for climatic adaptation in Drosophila melanogaster

(2008) P. S. Schmidt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA