Genomic Evidence of Rapid and Stable Adaptive Oscillations over Seasonal Time Scales in Drosophila

Genome-wide evolutionary response to a heat wave in Drosophila

(2013) F. Rodriguez-Trelles et al.   Biology Letters

SLiM: Simulating Evolution with Selection and Linkage

(2013) Philipp W. Messer   GENETICS

Fluctuating viability selection on morphology of cliff swallows is driven by climate

(2013) C. R. Brown et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Inference of chromosomal inversion dynamics from Pool-Seq data in natural and laboratory populations ofDrosophila melanogaster

(2013) Martin Kapun et al.   MOLECULAR ECOLOGY

Opposing selection and environmental variation modify optimal timing of breeding

(2013) C. E. Tarwater et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multiple Instances of Ancient Balancing Selection Shared Between Humans and Chimpanzees

(2013) E. M. Leffler et al.   SCIENCE

Strong Purifying Selection at Synonymous Sites in D. melanogaster

(2013) David S. Lawrie et al.   PLoS Genetics

A Genome-Wide, Fine-Scale Map of Natural Pigmentation Variation in Drosophila melanogaster

(2013) Héloïse Bastide et al.   PLoS Genetics

Correlated Changes in Body Melanisation and Mating Traits of Drosophila melanogaster: A Seasonal Analysis

(2012) Kapil Dev et al.   Evolutionary Biology

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Genomic Variation in Natural Populations of Drosophila melanogaster

(2012) C. H. Langley et al.   GENETICS

A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence

(2012) T. T. Hu et al.   GENOME RESEARCH

The Drosophila melanogaster Genetic Reference Panel

(2012) Trudy F. C. Mackay et al.   NATURE

Evolutionary conservation of codon optimality reveals hidden signatures of cotranslational folding

(2012) Sebastian Pechmann et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Empirical Validation of Pooled Whole Genome Population Re-Sequencing in Drosophila melanogaster

(2012) Yuan Zhu et al.   PLoS One

LDx: Estimation of Linkage Disequilibrium from High-Throughput Pooled Resequencing Data

(2012) Alison F. Feder et al.   PLoS One

Epistasis dominates the genetic architecture of Drosophila quantitative traits

(2012) W. Huang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fine-Scale Mapping of Natural Variation in Fly Fecundity Identifies Neuronal Domain of Expression and Function of an Aquaporin

(2012) Alan O. Bergland et al.   PLoS Genetics

The Many Landscapes of Recombination in Drosophila melanogaster

(2012) Josep M. Comeron et al.   PLoS Genetics

Population Genomics of Inversion Polymorphisms in Drosophila melanogaster

(2012) Russell B. Corbett-Detig et al.   PLoS Genetics

Population Genomics of Sub-Saharan Drosophila melanogaster: African Diversity and Non-African Admixture

(2012) John E. Pool et al.   PLoS Genetics

Thermal Tolerance in Widespread and Tropical Drosophila Species: Does Phenotypic Plasticity Increase with Latitude?

(2011) Johannes Overgaard et al.   AMERICAN NATURALIST

A statistical method for the detection of variants from next-generation resequencing of DNA pools

(2010) V. Bansal   BIOINFORMATICS

Genomic Differentiation Between Temperate and Tropical Australian Populations of Drosophila melanogaster

(2010) B. Kolaczkowski et al.   GENETICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Resistance to environmental stress in Drosophila ananassae: latitudinal variation and adaptation among populations

(2010) S. SISODIA et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Evidence that Adaptation in Drosophila Is Not Limited by Mutation at Single Sites

(2010) Talia Karasov et al.   PLoS Genetics

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

It’s about time: the temporal dynamics of phenotypic selection in the wild

(2009) Adam M. Siepielski et al.   ECOLOGY LETTERS

Impact of body melanisation on desiccation resistance in montane populations of D. melanogaster: Analysis of seasonal variation

(2009) Ravi Parkash et al.   JOURNAL OF INSECT PHYSIOLOGY

Systems genetics of complex traits in Drosophila melanogaster

(2009) Julien F Ayroles et al.   NATURE GENETICS

Fluctuating selection: the perpetual renewal of adaptation in variable environments

(2009) G. Bell   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Seasonal trade-off between starvation resistance and cold resistance in temperate wild-caught Drosophila simulans

(2008) McCabe C Kenny et al.   AUSTRALIAN JOURNAL OF ENTOMOLOGY

REPRODUCTIVE DIAPAUSE AND LIFE-HISTORY CLINES IN NORTH AMERICAN POPULATIONS OF DROSOPHILA MELANOGASTER

(2008) Paul S. Schmidt et al.   EVOLUTION

Clinal patterns of desiccation and starvation resistance in ancestral and invading populations of Drosophila subobscura

(2008) George W. Gilchrist et al.   Evolutionary Applications

Investigating latitudinal clines for life history and stress resistance traits inDrosophila simulansfrom eastern Australia

(2008) A. L. ARTHUR et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Genotype-by-Environment Interactions and Adaptation to Local Temperature Affect Immunity and Fecundity in Drosophila melanogaster

(2008) Brian P. Lazzaro et al.   PLoS Pathogens