Unique evolutionary trajectories in repeated adaptation to hydrogen sulphide-toxic habitats of a neotropical fish (Poecilia mexicana)

Speciation by selection: A framework for understanding ecology’s role in speciation

(2016) R. Brian Langerhans et al.   Current Zoology

The Effect of Selection Environment on the Probability of Parallel Evolution

(2015) Susan F. Bailey et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomics of Divergence along a Continuum of Parapatric Population Differentiation

(2015) Philine G. D. Feulner et al.   PLoS Genetics

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

H2S exposure elicits differential expression of candidate genes in fish adapted to sulfidic and non-sulfidic environments

(2014) Michael Tobler et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Sequencing pools of individuals — mining genome-wide polymorphism data without big funding

(2014) Christian Schlötterer et al.   NATURE REVIEWS GENETICS

Stick Insect Genomes Reveal Natural Selection's Role in Parallel Speciation

(2014) V. Soria-Carrasco et al.   SCIENCE

Parallel evolution of cox genes in H2S-tolerant fish as key adaptation to a toxic environment

(2014) Markus Pfenninger et al.   Nature Communications

Colonisation of toxic environments drives predictable life-history evolution in livebearing fishes (Poeciliidae)

(2013) Rüdiger Riesch et al.   ECOLOGY LETTERS

GENETIC DIFFERENTIATION AND SELECTION AGAINST MIGRANTS IN EVOLUTIONARILY REPLICATED EXTREME ENVIRONMENTS

(2013) Martin Plath et al.   EVOLUTION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Shared selective pressure and local genomic landscape lead to repeatable patterns of genomic divergence in sunflowers

(2013) Sebastien Renaut et al.   MOLECULAR ECOLOGY

The genetic causes of convergent evolution

(2013) David L. Stern   NATURE REVIEWS GENETICS

The Rediscovery of a Long Described Species Reveals Additional Complexity in Speciation Patterns of Poeciliid Fishes in Sulfide Springs

(2013) Maura Palacios et al.   PLoS One

Population genomics of rapid adaptation by soft selective sweeps

(2013) Philipp W. Messer et al.   TRENDS IN ECOLOGY & EVOLUTION

Genomic islands of divergence are not affected by geography of speciation in sunflowers

(2013) S. Renaut et al.   Nature Communications

Widespread Recurrent Evolution of Genomic Features

(2012) I. Maeso et al.   Genome Biology and Evolution

Physiological adaptation along environmental gradients and replicated hybrid zone structure in swordtails (Teleostei: Xiphophorus)

(2012) Z.W. Culumber et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

The ecological and genetic basis of convergent thick-lipped phenotypes in cichlid fishes

(2012) Marco Colombo et al.   MOLECULAR ECOLOGY

The genomic basis of adaptive evolution in threespine sticklebacks

(2012) Felicity C. Jones et al.   NATURE

Empirical Validation of Pooled Whole Genome Population Re-Sequencing in Drosophila melanogaster

(2012) Yuan Zhu et al.   PLoS One

Predictability of evolution depends nonmonotonically on population size

(2012) I. G. Szendro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The probability of genetic parallelism and convergence in natural populations

(2012) G. L. Conte et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Molecular Diversity of Adaptive Convergence

(2012) O. Tenaillon et al.   SCIENCE

Replaying the Tape of Life: Quantification of the Predictability of Evolution

(2012) Alexander E. Lobkovsky et al.   Frontiers in Genetics

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)

(2011) R. Kofler et al.   BIOINFORMATICS

PARALLEL AND NONPARALLEL ASPECTS OF ECOLOGICAL, PHENOTYPIC, AND GENETIC DIVERGENCE ACROSS REPLICATE POPULATION PAIRS OF LAKE AND STREAM STICKLEBACK

(2011) Renaud Kaeuffer et al.   EVOLUTION

EVOLUTION IN EXTREME ENVIRONMENTS: REPLICATED PHENOTYPIC DIFFERENTIATION IN LIVEBEARING FISH INHABITING SULFIDIC SPRINGS

(2011) Michael Tobler et al.   EVOLUTION

Divergence hitchhiking and the spread of genomic isolation during ecological speciation-with-gene-flow

(2011) S. Via   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals

(2011) Robert Kofler et al.   PLoS One

The complex analytical landscape of gene flow inference

(2011) Peter B. Marko et al.   TRENDS IN ECOLOGY & EVOLUTION

Adaptation in the age of ecological genomics: insights from parallelism and convergence

(2011) Kathryn R. Elmer et al.   TRENDS IN ECOLOGY & EVOLUTION

Extreme habitats are not refuges: poeciliids suffer from increased aerial predation risk in sulphidic southern Mexican habitats

(2010) RÜDIGER RIESCH et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Locally adapted fish populations maintain small-scale genetic differentiation despite perturbation by a catastrophic flood event

(2010) Martin Plath et al.   BMC EVOLUTIONARY BIOLOGY

Genomic Differentiation Between Temperate and Tropical Australian Populations of Drosophila melanogaster

(2010) B. Kolaczkowski et al.   GENETICS

The Next Generation of Molecular Markers From Massively Parallel Sequencing of Pooled DNA Samples

(2010) Andreas Futschik et al.   GENETICS

Unified Framework to Evaluate Panmixia and Migration Direction Among Multiple Sampling Locations

(2010) P. Beerli et al.   GENETICS

Complementary effect of natural and sexual selection against immigrants maintains differentiation between locally adapted fish

(2010) Martin Plath et al.   NATURWISSENSCHAFTEN

Variation along the shy–bold continuum in extremophile fishes (Poecilia mexicana, Poecilia sulphuraria)

(2009) Rüdiger Riesch et al.   BEHAVIORAL ECOLOGY AND SOCIOBIOLOGY

Structural and Functional Insights into Sulfide:Quinone Oxidoreductase,

(2009) José A. Brito et al.   BIOCHEMISTRY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

The causes of repeated genetic evolution

(2009) Nicolas Gompel et al.   DEVELOPMENTAL BIOLOGY

Effective population size and patterns of molecular evolution and variation

(2009) Brian Charlesworth   NATURE REVIEWS GENETICS

Genetics and the understanding of selection

(2009) Laurence D. Hurst   NATURE REVIEWS GENETICS

Evolution: like any other science it is predictable

(2009) S. Conway Morris   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Is Genetic Evolution Predictable?

(2009) D. L. Stern et al.   SCIENCE

Stochasticity in evolution

(2009) Thomas Lenormand et al.   TRENDS IN ECOLOGY & EVOLUTION

The Properties of Adaptive Walks in Evolving Populations of Fungus

(2009) Sijmen E. Schoustra et al.   PLOS BIOLOGY

TOXIC HYDROGEN SULFIDE AND DARK CAVES: PHENOTYPIC AND GENETIC DIVERGENCE ACROSS TWO ABIOTIC ENVIRONMENTAL GRADIENTS INPOECILIA MEXICANA

(2008) Michael Tobler et al.   EVOLUTION

Epistasis — the essential role of gene interactions in the structure and evolution of genetic systems

(2008) Patrick C. Phillips   NATURE REVIEWS GENETICS

The origin and evolution of a unisexual hybrid: Poecilia formosa

(2008) K.P Lampert et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES