Impact of spatial organization on a novel auxotrophic interaction among soil microbes

Engineering microbial communities using thermodynamic principles and electrical interfaces

(2018) Christian Zerfaß et al.   CURRENT OPINION IN BIOTECHNOLOGY

Underlying mechanisms for syntrophic metabolism of essential enzyme cofactors in microbial communities

(2017) Margaret F Romine et al.   ISME Journal

Metabolic origins of spatial organization in the tumor microenvironment

(2017) Carlos Carmona-Fontaine et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolic evolution and the self-organization of ecosystems

(2017) Rogier Braakman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Competition for vitamin B1 (thiamin) structures numerous ecological interactions

(2017) Clifford E. Kraft et al.   QUARTERLY REVIEW OF BIOLOGY

Environmental pH modulation by pathogenic fungi as a strategy to conquer the host

(2017) Slavena Vylkova   PLoS Pathogens

Yeast Creates a Niche for Symbiotic Lactic Acid Bacteria through Nitrogen Overflow

(2017) Olga Ponomarova et al.   Cell Systems

Cell-to-cell heterogeneity emerges as consequence of metabolic cooperation in a synthetic yeast community

(2016) Kate Campbell et al.   Biotechnology Journal

Metabolic modelling in a dynamic evolutionary framework predicts adaptive diversification of bacteria in a long-term evolution experiment

(2016) Tobias Großkopf et al.   BMC EVOLUTIONARY BIOLOGY

Engineering microbial consortia for controllable outputs

(2016) Stephen R Lindemann et al.   ISME Journal

Challenges in microbial ecology: building predictive understanding of community function and dynamics

(2016) Stefanie Widder et al.   ISME Journal

Sebacinales - one thousand and one interactions with land plants

(2016) Michael Weiß et al.   NEW PHYTOLOGIST

Plant root-microbe communication in shaping root microbiomes

(2016) Andrew Lareen et al.   PLANT MOLECULAR BIOLOGY

The Soil-Borne Supremacy

(2016) Corné M.J. Pieterse et al.   TRENDS IN PLANT SCIENCE

Cell-to-cell heterogeneity emerges as consequence of metabolic cooperation in a synthetic yeast community

(2016) Kate Campbell et al.   Biotechnology Journal

Self-organized patchiness facilitates survival in a cooperatively growing Bacillus subtilis population

(2016) Christoph Ratzke et al.   Nature Microbiology

Better together: engineering and application of microbial symbioses

(2015) Stephanie G Hays et al.   CURRENT OPINION IN BIOTECHNOLOGY

Temporal and spatial constraints on community assembly during microbial colonization of wood in seawater

(2015) Dimitri Kalenitchenko et al.   ISME Journal

Proline auxotrophy in Sinorhizobium meliloti results in a plant-specific symbiotic phenotype

(2015) George C. diCenzo et al.   MICROBIOLOGY-SGM

Impact of plant domestication on rhizosphere microbiome assembly and functions

(2015) Juan E. Pérez-Jaramillo et al.   PLANT MOLECULAR BIOLOGY

Networks of energetic and metabolic interactions define dynamics in microbial communities

(2015) Mallory Embree et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Synthetic microbial communities

(2014) Tobias Großkopf et al.   CURRENT OPINION IN MICROBIOLOGY

Sinorhizobium melilotiFlavin Secretion and Bacteria-Host Interaction: Role of the Bifunctional RibBA Protein

(2014) Svetlana N. Yurgel et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Genetic drift opposes mutualism during spatial population expansion

(2014) M. J. I. Muller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Syntrophic exchange in synthetic microbial communities

(2014) M. T. Mee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Niche engineering demonstrates a latent capacity for fungal-algal mutualism

(2014) E. F. Y. Hom et al.   SCIENCE

Genomic distribution of B-vitamin auxotrophy and uptake transporters in environmental bacteria from theChloroflexiphylum

(2014) Irina A. Rodionova et al.   Environmental Microbiology Reports

Structure and Functions of the Bacterial Microbiota of Plants

(2013) Davide Bulgarelli et al.   Annual Review of Plant Biology

Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria

(2013) Samay Pande et al.   ISME Journal

Bacterial Community Morphogenesis Is Intimately Linked to the Intracellular Redox State

(2013) L. E. P. Dietrich et al.   JOURNAL OF BACTERIOLOGY

Morphological optimization for access to dual oxidants in biofilms

(2013) C. P. Kempes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Widespread decay of vitamin-related pathways: coincidence or consequence?

(2013) Katherine E. Helliwell et al.   TRENDS IN GENETICS

Engineering ecosystems and synthetic ecologies

(2012) Michael T. Mee et al.   Molecular BioSystems

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

The Black Queen Hypothesis: Evolution of Dependencies through Adaptive Gene Loss

(2012) J. J. Morris et al.   mBio

The Role of B Vitamins in Marine Biogeochemistry

(2011) Sergio A. Sañudo-Wilhelmy et al.   Annual Review of Marine Science

Insights into the Evolution of Vitamin B12 Auxotrophy from Sequenced Algal Genomes

(2011) K. E. Helliwell et al.   MOLECULAR BIOLOGY AND EVOLUTION

Piriformospora indica-a mutualistic basidiomycete with an exceptionally large plant host range

(2011) XIAOYU QIANG et al.   MOLECULAR PLANT PATHOLOGY

Saccharomyces cerevisiae THI4p is a suicide thiamine thiazole synthase

(2011) Abhishek Chatterjee et al.   NATURE

SubtiWiki--a comprehensive community resource for the model organism Bacillus subtilis

(2011) U. Mader et al.   NUCLEIC ACIDS RESEARCH

The NCBI Taxonomy database

(2011) S. Federhen   NUCLEIC ACIDS RESEARCH

Plant and microbial strategies to improve the phosphorus efficiency of agriculture

(2011) Alan E. Richardson et al.   PLANT AND SOIL

Broad-Spectrum Suppression of Innate Immunity Is Required for Colonization of Arabidopsis Roots by the Fungus Piriformospora indica

(2011) S. Jacobs et al.   PLANT PHYSIOLOGY

Arbuscular mycorrhiza and soil nitrogen cycling

(2011) Stavros D. Veresoglou et al.   SOIL BIOLOGY & BIOCHEMISTRY

Endophytic Life Strategies Decoded by Genome and Transcriptome Analyses of the Mutualistic Root Symbiont Piriformospora indica

(2011) Alga Zuccaro et al.   PLoS Pathogens

High-density spore production of Piriformospora indica, a plant growth-promoting endophyte, by optimization of nutritional and cultural parameters

(2010) Vinod Kumar et al.   BIORESOURCE TECHNOLOGY

A Phosphate Transporter from the Root Endophytic FungusPiriformospora indicaPlays a Role in Phosphate Transport to the Host Plant

(2010) Vikas Yadav et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

The Structural and Biochemical Foundations of Thiamin Biosynthesis

(2009) Christopher T. Jurgenson et al.   Annual Review of Biochemistry

A cell wall extract from the endophytic fungusPiriformospora indicapromotes growth of Arabidopsis seedlings and induces intracellular calcium elevation in roots

(2009) Jyothilakshmi Vadassery et al.   PLANT JOURNAL

Rapid HPLC Measurement of Thiamine and Its Phosphate Esters in Whole Blood

(2008) J. Lu et al.   CLINICAL CHEMISTRY

The Root-Colonizing EndophytePirifomospora indicaConfers Drought Tolerance inArabidopsisby Stimulating the Expression of Drought Stress–Related Genes in Leaves

(2008) Irena Sherameti et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Bacillus subtilis isolated from the human gastrointestinal tract

(2008) Huynh A. Hong et al.   RESEARCH IN MICROBIOLOGY

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE