Engineering microbial consortia for controllable outputs

Distributing a metabolic pathway among a microbial consortium enhances production of natural products

(2015) Kang Zhou et al.   NATURE BIOTECHNOLOGY

Mechanistic links between cellular trade-offs, gene expression, and growth

(2015) Andrea Y. Weiße et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Emergent genetic oscillations in a synthetic microbial consortium

(2015) Y. Chen et al.   SCIENCE

Comprehensive bioimaging with fluorinated nanoparticles using breathable liquids

(2015) Michael E. Kurczy et al.   Nature Communications

Inference of interactions in cyanobacterial–heterotrophic co-cultures via transcriptome sequencing

(2014) Alexander S Beliaev et al.   ISME Journal

Dynamics in microbial communities: unraveling mechanisms to identify principles

(2014) Allan Konopka et al.   ISME Journal

Principles of genetic circuit design

(2014) Jennifer A N Brophy et al.   NATURE METHODS

Realizing the potential of synthetic biology

(2014) George M. Church et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Genetic drift opposes mutualism during spatial population expansion

(2014) M. J. I. Muller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Syntrophic exchange in synthetic microbial communities

(2014) M. T. Mee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomically encoded analog memory with precise in vivo DNA writing in living cell populations

(2014) F. Farzadfard et al.   SCIENCE

Mathematical Modeling of Microbial Community Dynamics: A Methodological Review

(2014) Hyun-Seob Song et al.   Processes

“Replica-Extraction-Transfer” Nanostructure-Initiator Mass Spectrometry Imaging of Acoustically Printed Bacteria

(2013) Katherine B. Louie et al.   ANALYTICAL CHEMISTRY

Peptide-based communication system enablesEscherichia colitoBacillus megateriuminterspecies signaling

(2013) Nicholas Marchand et al.   BIOTECHNOLOGY AND BIOENGINEERING

Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities

(2013) Migun Shakya et al.   ENVIRONMENTAL MICROBIOLOGY

Design and characterization of synthetic fungal-bacterial consortia for direct production of isobutanol from cellulosic biomass

(2013) Jeremy J. Minty et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolic and Demographic Feedbacks Shape the Emergent Spatial Structure and Function of Microbial Communities

(2013) Sylvie Estrela et al.   PLoS Computational Biology

Strong inter-population cooperation leads to partner intermixing in microbial communities

(2013) Babak Momeni et al.   eLife

The design of long-term effective uranium bioremediation strategy using a community metabolic model

(2012) K. Zhuang et al.   BIOTECHNOLOGY AND BIOENGINEERING

Ecosystem processes and interactions in a morass of diversity

(2012) James I. Prosser   FEMS MICROBIOLOGY ECOLOGY

Metabolic specialization and the assembly of microbial communities

(2012) David R Johnson et al.   ISME Journal

Trait-Based Representation of Biological Nitrification: Model Development, Testing, and Predicted Community Composition

(2012) Nicholas J. Bouskill et al.   Frontiers in Microbiology

iDynoMiCS: next-generation individual-based modelling of biofilms

(2011) Laurent A. Lardon et al.   ENVIRONMENTAL MICROBIOLOGY

Synthetic Escherichia coli consortia engineered for syntrophy demonstrate enhanced biomass productivity

(2011) Hans C. Bernstein et al.   JOURNAL OF BIOTECHNOLOGY

Self-Organization, Layered Structure, and Aggregation Enhance Persistence of a Synthetic Biofilm Consortium

(2011) Katie Brenner et al.   PLoS One

Molecular-level tradeoffs and metabolic adaptation to simultaneous stressors

(2010) Ross P Carlson et al.   CURRENT OPINION IN BIOTECHNOLOGY

Timescales, dynamics, and ecological understanding1

(2010) Alan Hastings   ECOLOGY

Complex function by design using spatially pre-structured synthetic microbial communities: degradation of pentachlorophenol in the presence of Hg(ii)

(2010) Hyun Jung Kim et al.   Integrative Biology

Construction of a Genetic Multiplexer to Toggle between Chemosensory Pathways in Escherichia coli

(2010) Tae Seok Moon et al.   JOURNAL OF MOLECULAR BIOLOGY

An Environment-Sensitive Synthetic Microbial Ecosystem

(2010) Bo Hu et al.   PLoS One

Mathematical Description of Microbial Biofilms

(2010) Isaac Klapper et al.   SIAM REVIEW

In silico approaches to study mass and energy flows in microbial consortia: a syntrophic case study

(2009) Reed Taffs et al.   BMC Systems Biology

Synthesis of Methyl Halides from Biomass Using Engineered Microbes

(2009) Travis S. Bayer et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The second wave of synthetic biology: from modules to systems

(2009) Priscilla E. M. Purnick et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Defined spatial structure stabilizes a synthetic multispecies bacterial community

(2008) H. J. Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Engineering microbial consortia: a new frontier in synthetic biology

(2008) Katie Brenner et al.   TRENDS IN BIOTECHNOLOGY

A co-fermentation strategy to consume sugar mixtures effectively

(2008) Mark A Eiteman et al.   Journal of Biological Engineering